current user: public |
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Query: HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . | |||||||
# | Score | Template | Links and tools | %id | First | MSKKKRGEERMKEEDNILKKVGKKNSFKVPEGYFENLTSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFIGAALIIRVASSNHQPTTAGDHLTANEAATEVVSDEYIDVALDRSMLDDYSLSVYLSDATAE | Last |
1 | -7.490 | [S] COG5343 Uncharacterized protein conserved in bacteria | ali follow.. | 10 | 35 | TERDGELRAAIAASRERFLPLDTSVAPAAVN---SELWSNIESRLPPQAKFTANKSTRTANDNRKNGWRSIAVSAIAATLVLAAGLTFSLTRTTEPLVIAVLVNEA............................... | 137 |
2 | -7.020 | [S] COG4933 Uncharacterized conserved protein | ali follow.. | 17 | 92 | LSTPRRFTRPLT-----LPELKERFGFKAPQSF---AKPELQKALRNEHTN...................................................................................... | 136 |
3 | -6.570 | [A] KOG3080 Nucleolar protein-like/EBNA1-binding protein | ali follow.. | 14 | 109 | .PEEDPVLNDFKREMLFHRQAQSA-KTRRPDDYFAEM-QKVRANLMAKQQGQAKSERI............................................................................... | 183 |
4 | -6.300 | [K] KOG4477 RING1 interactor RYBP and related Zn-finger-containing proteins | ali follow.. | 20 | 388 | .DASIFNSKSCQIPDYMINREAAQKIFIVANGYFEEFPRRV................................................................................................ | 430 |
5 | -6.200 | [T] COG3073 Negative regulator of sigma E activity | ali follow.. | 6 | 23 | LTHDPEMQKTWESYHLIRDSMRGDTPDVLHFDISARVMAAIENE-APQQWQKMPFWKKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETASPVSLGVPSEAAPVGSQQQQVQEQRRRINAMLQDYE.. | 181 |
6 | -5.970 | [J] KOG2311 NAD/FAD-utilizing protein possibly involved in translation | ali follow.. | 10 | 607 | LKIEATYESVLFHQLQEIKGVQQDEALQLPKDYDVSLSHEVREKLHFSRPQTIGAASRIP---------VTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL........................ | 717 |
7 | -5.960 | [U] KOG3142 Prenylated rab acceptor 1 | ali follow.. | 14 | 22 | ISRAKHRIKSGLATRRPWKSMFDFESMTLPHG-FFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEP.............................................. | 111 |
8 | -5.920 | [R] KOG4253 Tryptophan-rich basic nuclear protein | ali follow.. | 4 | 40 | .KKYLAKVKERHELKEFNNSISAQDNYA-----WTKNNRKL-DSLDKEINNLKDEIQSENKAFQAHLHKLRLLALTVPFFVFKIMYGKT................................................ | 122 |
9 | -5.890 | [S] COG4116 Uncharacterized protein conserved in bacteria | ali follow.. | 18 | 1 | MSQEIEIEFKNMLTKQEFKNITEKDFTDQKNHYFDTDSFALKQK............................................................................................. | 50 |
10 | -5.850 | [S] COG5346 Predicted membrane protein | ali follow.. | 10 | 1 | MTENRQAVETVVKSPELVEQILSDEPLPPPSDLYNDIADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISAILILLFAVFLVWSGYP............................................... | 114 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |