current user: public

If you have questions about the server, please let us know.

Query: HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MSKKKRGEERMKEEDNILKKVGKKNSFKVPEGYFENLTSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFIGAALIIRVASSNHQPTTAGDHLTANEAATEVVSDEYIDVALDRSMLDDYSLSVYLSDATAELast
1 -7.490[S] COG5343 Uncharacterized protein conserved in bacteria  ali follow..  10  35TERDGELRAAIAASRERFLPLDTSVAPAAVN---SELWSNIESRLPPQAKFTANKSTRTANDNRKNGWRSIAVSAIAATLVLAAGLTFSLTRTTEPLVIAVLVNEA............................... 137
2 -7.020[S] COG4933 Uncharacterized conserved protein  ali follow..  17  92LSTPRRFTRPLT-----LPELKERFGFKAPQSF---AKPELQKALRNEHTN...................................................................................... 136
3 -6.570[A] KOG3080 Nucleolar protein-like/EBNA1-binding protein  ali follow..  14  109.PEEDPVLNDFKREMLFHRQAQSA-KTRRPDDYFAEM-QKVRANLMAKQQGQAKSERI............................................................................... 183
4 -6.300[K] KOG4477 RING1 interactor RYBP and related Zn-finger-containing proteins  ali follow..  20  388.DASIFNSKSCQIPDYMINREAAQKIFIVANGYFEEFPRRV................................................................................................ 430
5 -6.200[T] COG3073 Negative regulator of sigma E activity  ali follow..  23LTHDPEMQKTWESYHLIRDSMRGDTPDVLHFDISARVMAAIENE-APQQWQKMPFWKKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETSQQPETASPVSLGVPSEAAPVGSQQQQVQEQRRRINAMLQDYE.. 181
6 -5.970[J] KOG2311 NAD/FAD-utilizing protein possibly involved in translation  ali follow..  10  607LKIEATYESVLFHQLQEIKGVQQDEALQLPKDYDVSLSHEVREKLHFSRPQTIGAASRIP---------VTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL........................ 717
7 -5.960[U] KOG3142 Prenylated rab acceptor 1  ali follow..  14  22ISRAKHRIKSGLATRRPWKSMFDFESMTLPHG-FFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEP.............................................. 111
8 -5.920[R] KOG4253 Tryptophan-rich basic nuclear protein  ali follow..  40.KKYLAKVKERHELKEFNNSISAQDNYA-----WTKNNRKL-DSLDKEINNLKDEIQSENKAFQAHLHKLRLLALTVPFFVFKIMYGKT................................................ 122
9 -5.890[S] COG4116 Uncharacterized protein conserved in bacteria  ali follow..  18  1MSQEIEIEFKNMLTKQEFKNITEKDFTDQKNHYFDTDSFALKQK............................................................................................. 50
10 -5.850[S] COG5346 Predicted membrane protein  ali follow..  10  1MTENRQAVETVVKSPELVEQILSDEPLPPPSDLYNDIADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISAILILLFAVFLVWSGYP............................................... 114

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 3 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.