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Query: HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPYRLLPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKITFRYGTCPCCRCDAYLYALast
1 -7.760[R] KOG3529 Radixin, moesin and related proteins of the ERM family  ali follow..  11  4.......KAINVRVTSMDSELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYTDNKGFPTWLKLNKKVLSQDVKKDPTLVFKFRA---------------KFYPEDVAEEIIQDVTMRLFYLQVKDGILSDEIYCPPETSVLLASYAMQAKYGDYVPETHVAGCLTADRLLPQRVLGQFKLNSEEWERRIMTWWADHRATTREQAMLEKIAQDLEMYGVNYFEIRNKKGTDLYLGVDLNIYDKGFPWSEIRNISFN............... 252
2 -6.450[T] COG1734 DnaK suppressor protein  ali follow..  12  1.........................................................................................................................................MQEGQKRKTSSLSILAIAGVEPYQEKPGEEYMNAAQLSHFKLILEAWRNQLRDEVDRTVSHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIE------------KTLKKVE-DFGFCESCRLEARPTA 132
3 -6.320[R] COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains  ali follow..  11  379.......KVYKAEIQQRREAFNRAKMDHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALHDTARERQK--QKFLEGFFIDAASGPARKAALRSFGIETAAKQVKGFHLTQAVIDWKASC---ERRFVFRPNEAVTPAERQAVMAKMAA------KRHRLESALTVGATELQRFRLHAPARTMPLMEPLRQAAEKLAQAQADLSRC......................................................... 591
4 -5.900[O] KOG0801 Predicted E3 ubiquitin ligase  ali follow..  12  120....................................................................................................................................................SRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKDAGECVICLE------LLQGDTIAR-----CLCIY--IDSWFEVNR------SCPEHPAD..... 227
5 -5.760[B] KOG4140 Nuclear protein Ataxin-7  ali follow..  11  1..........................................................................................................................MSERAADDVRGEPRRAAAAAPPPPQPQRQQHPPPPPRRTRPEDGGPGAASTSAAAMATVGERRPSPEVMLGQSWNLWVEASKLPGKDGTELD------------ESFKEFGKNREVM-----------GLCREDMPFGFCPCNDCNQVV.. 157
6 -5.760[O] KOG2930 SCF ubiquitin ligase, Rbx1 component  ali follow..  13  64...................................................................................................................................................................................................................................TSEECTVAWGVCNHAF--ISRWLKTRQ------VCPLDNRE..... 100
7 -5.620[O] KOG4265 Predicted E3 ubiquitin ligase  ali follow..  12  80.PVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLETFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEW-----------------------------KDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCL---------SCADTLRYQANNCPICR....... 317
8 -5.560[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  30  25............................................................................................................................................................................................................................................AVCYSEMLPTFCFICLKGVSVSNNDCPICR....... 64
9 -5.520[O] KOG0978 E3 ubiquitin ligase involved in syntaxin degradation  ali follow..  628..........RTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLS---EKQVMEKQLHQV--VENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVI-----------SLETTKWEVADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDEREKKKLEEELMELNKELEEL-AAIVRLQEEVKNCKNILKVCFD----LFCQQCIQRLEIRHRKCPGCG-LVKM.. 899
10 -5.510[R] KOG3530 FERM domain protein EHM2  ali follow..  12  1.....MFRSKNEGNIVYKCTVRLLDDSDVLECEFQPFHKGILEYLCGELEIKEKDYFGLRYVDSSKQRHWLDLSKSIIKQCKE---LFSLRV----------KFYPAD------PFRLTGNARIMLYQQL----KRDLRHGRLYCSLGEAAALGALIVQEELGDYNEDVHVGSYVSSIELALRQTECLEKKIIELHKKREPGQNLSLAMDEFLGIARGYGIDPHPVKDHRGSQQYVGIN-GKRSQHFRWNEIHKINFE............... 247

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.