current user: public
If you have questions about the server, please let us know.

Query: HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MQVDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLERCPTVGEILENNPSALKNLKGLast
1 -9.970[O] KOG0006 E3 ubiquitin-protein ligase (Parkin protein)  ali follow..  20  332........................CGAFCRECKE-TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGG----CMHMKCPQPQRLEWCWNC......................... 421
2 -9.150[R] KOG4377 Zn-finger protein  ali follow..  16  307........................CGFHCRDCVQHTARHERMDTLMGDDFRQFRANMQCGVKTSHFHCRKCRNAGFRKVGGNEQCDSPGCSYAQRHTHCVTCDGVLSRAQLAAHKHRTGFPKQE... 488
3 -8.760[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  11  42...................GSVGACRQ-CMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGG--------NCHLQDMTVMTGHNRCIACYR---CVRY................ 162
4 -8.730[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation  ali follow..  13  171..MANLIPGKARAEYGEQRQYCPVCGLHCNLC-------------------------ETEWHVVRVKCSNCEQSGKLHYWS-----LDDEQAAIKAESCDDCGTY...................... 261
5 -8.670[C] KOG3049 Succinate dehydrogenase, Fe-S protein subunit  ali follow..  9  168...QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG--AVLMQAYRWMIDSRDDFTEERLAKLQDPFS----------LYRCH------TIMNCTR--TCPKGLNPGKAIAEIKKMM.. 270
6 -8.560[L] COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain  ali follow..  20  3...............NTMIQSCNECGYRCSACHGTGFRSTEDIKDHFKGVSNSARQRFDLEDSHEVPCEVCRGKGEVEVR--ETCP--TCGGKGEVNICPSCG........................ 95
7 -8.450[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit  ali follow..  9  152...KEWKQSHEDRLKLDGLYECILCACCSTSCPSYWWNGDRYLG--AVLLQAYRWLIDSRDEATGERLDNLEDPFR----------LYRC------HTIMNCAQ--ACPKGLNPAKAIAEIKKMM.. 254
8 -8.180[T] KOG3575 FOG: Hormone receptors  ali follow..  14  18...IMSSFPEPSPSSKRPTENCKVCGSACLGCTVFFRRAVVKNLKYK-----------------------CMKEQ--------NCLISCTYRNA----CRYC-RFQKCFAV................ 99
9 -8.120[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  14  70...................SVAGNCRM-CAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGG--------ECDLQDQSMMFGMTRCIQCTR---CIRF................ 185
10 -8.050[S] KOG4543 Uncharacterized conserved protein  ali follow..  10  139...STSENATAVTSEEQPQLIDPFIDFECHVCHLFGELKVIDGRYDSPVYFMRDPFKPPSRDRAKTPCSACNQ---------PVCMSDACSLFFGANFCAPCRRFP..................... 253
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.