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Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -7.640[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  12  59.........................................LHLRRVESGGAKSAEESECESEDGIEGDA-VLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKEHDKFR------EDEQAPKSRQELIALY-----------------------GYDIR 245
2 -6.200[S] COG5373 Predicted membrane protein  ali follow..  7  1MLEAIALLAFV----MALAAFLGGRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGR-VQYSIEAGLLSPAVRLTLAAIFGLA---LGVAGEVIRRRDVPAIADRFRNAMIPGLTAAGAVTLFGVVY----AAYGIYDFIGTGAA.......................... 223
3 -6.130[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  6  4........................................KLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKEYQDSDTSDEEDIRNTVGNIPMYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTGQDVRLTDEDIAL. 229
4 -6.030[S] KOG1043 Ca2+-binding transmembrane protein LETM1/MRS7  ali follow..  5  546.............................................DGAFAETKIAKRLRHKLNSMIEDVDSMVDKLEDEKRNIREMLIDPTVENSVDLKKEREVRIQD---------SLAKLKESKGEQADDGEQRERIEALLKTIDEDSDGIVDKQLVLEVIELLEKHTDVHVSAAQMASMIGTLKKEDEVAGLTEEIRKVQSGNYQMPILPTGPSSADAFNQPQGVYTASKQVPARSEQ.. 735
5 -5.890[R] KOG2295 C2H2 Zn-finger protein  ali follow..  7  369.........................................RKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRF................................ 538
6 -5.860[S] KOG2422 Uncharacterized conserved protein  ali follow..  9  4.........................................RLLKKVLQEHEDSKLQKHHEEEE-------------EEDEEESGARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQSSVADHVQPVSKNKSKKKKKKKNKESGSNVPKAEMTLDETLEALGLNANSKQDKVQETKPNADSSKKASSRFVLEDSKYLNLENELRRTYGSKAMRSFESESGSQGGS............. 180
7 -5.720[U] KOG4031 Vesicle coat protein clathrin, light chain  ali follow..  10  84..............................................ADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA-SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQT...................................................... 225
8 -5.700[R] KOG0038 Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily)  ali follow..  17  98..................................................................................................................................................SRDGQGNLSFEDFLDALSVFSEQAPRDIKVFYAFKIY--IGHADLMSCLTTMTKNELSPEEHQQIADKVIEEADVDGDGKLSILERAPDFLSTFHIR 205
9 -5.530[R] KOG1400 Predicted ATP-dependent protease PIL, contains LON domain  ali follow..  6  2.............................................DEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPSPPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPGSEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQRVRSMVFSQERRRSRTS--EETSQEAAEQPVDPPPQQPPRPPIDIGFDTN 197
10 -5.410[R] KOG0274 Cdc4 and related F-box and WD-40 proteins  ali follow..  12  498................................................................TMSKHVKSWSYTIPKPFVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIMLGLDQIAQ-------ERREKMEARQKFEQHFGEGLVGLSEEEIIAYVTMLSQEEEAKRMVQLSMDSLNALSSNHEPPQEQANVAELNEQEQIELAMRLSLME......................... 661
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.