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Query: PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7], from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRPLast
1 -10.700[R] KOG3211 Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization  ali follow..  10  42SITVKLPQIMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQAVVFLNLFVV..................................................................................... 110
2 -8.740[U] COG0690 Preprotein translocase subunit SecE  ali follow..  12  2ALEIEKKKNAHEVENQKSKGLNRFLWLLVIVVIATAALGNIYFVEQFSTPIRVVGVVVLLLIALGLAALTNQGVKARHFF----SESRIELRKIVWPTRP...................................................... 97
3 -8.340[E] KOG3145 Cystine transporter Cystinosin  ali follow..  10  284.....FPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDI-LQMILQAVNVNDWSAFYANPVKFGLGFVSIF----------IIFMVQHYVLYPN------------------------AEVPHNEYHGVDNPNPDNIARDAEQYAGDSESMESTEP 399
4 -8.140[G] KOG2234 Predicted UDP-galactose transporter  ali follow..  6  322.............SFDILQGHSRATMFLILNNAAQGILSSFFFK-YADTILKKYSSTVATIFTGIASAA----FGHVITMNFLLGISIVFISMHQFFSPLA----KARDEQQQNGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTP 454
5 -8.040[S] KOG2913 Predicted membrane protein  ali follow..  13  216....RIPQIIKNYRHSSCEGLSLTMFYIIVAANFTYGISVLL................................................................................................................ 253
6 -7.990[C] COG0356 F0F1-type ATP synthase, subunit a  ali follow..  9  176...VNLALESVTLLAKPV-SLAFRLFGNMYAGELIFILIAVMY-----MANNFALNSMGIFMHLAWAIFHILVITLQAFIFMMLTVVYLS................................................................ 256
7 -7.790[S] COG3610 Uncharacterized conserved protein  ali follow..  13  16.........VATVTFAIITNVPKRALNACGITGTFGWMAYWTLMQMDSGTGASSLAGAFVVAILSHFFAKHKKMPITIFNVPGIVPLV--PGGLAYQA........................................................ 102
8 -7.720[I] KOG3845 MLN, STAR and related lipid-binding proteins  ali follow..  7  49DWDKVFFNEINIFNPKFIRISLFDIVLLAVLRMLILGVVYGICLVKQWYTVAFTTLASSAYILMKVLFYFNHSLIITSFTLCWSEFYLMPFQILPRERRYARRELDGIENPEFSTDDEARSNNRHRRGRRQQNSGNQSEAPTAVPSRVSSGVF. 209
9 -7.550[U] KOG3106 ER lumen protein retaining receptor  ali follow..  7  61.....................SVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVINHEFTVMEVLWTFLESVAILPQLFLVSRTGEAESIT................................................ 148
10 -7.520[S] COG3152 Predicted membrane protein  ali follow..  6  1...MSLQTLLFSFQGRI----GRQAFWLWNICYYAMIAGFAMGSNLLFPDILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLL....................................................................... 80
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.