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Query: PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRLLast
1 -5.890[S] COG5317 Uncharacterized protein conserved in bacteria  ali follow..  28........................................................................................................YQEGMGLV--EQAAEYLDGKGRAEAKKLSRLAATLYAAESMRLWLLLQRAANSGEMTRDQVASE----------------------------KSKVRLDTASAHDEAAGWAELPEEFLDLVTRSLRLQALAVVDMQPMGRRPNP---VSDQISLL 170
2 -5.710[S] COG5523 Predicted integral membrane protein  ali follow..  16  158.......................................................................................................RYSMAYYILNDNPDMGAYEAIVESKKMMKGNKWRLFWLRLTFIGWNLL............................................................................................................ 205
3 -5.640[O] KOG3607 Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family  ali follow..  203....RGVKDSKVALSTCNGEDDTFVYM--------IEPLELVHDEKSTGRPHIIQKTLAGQYSKQMKNLTMERGDQWPFLSELQWLKRRKRAVNPSRGIFEEMKYLELMIVNDHKTYKKHRSSHAHTNNFAEQLNTRVVLVA--VETW-----TEKDQIDITTNPVQMLHEFSKYRQRIKQHADAVHLISRVTFHYKRSSLSYFG-SRTRGVGVNEYGLPMAVAQVLSQSL............................ 433
4 -5.330[J] KOG3449 60S acidic ribosomal protein P2  ali follow..  13  26.............IVESVGAEIDQEKIDLFFSLIKDRDVT-----------ELIAVGREKMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESEDDGGMMSLFD.................................................................................................................................................. 114
5 -5.210[KT] COG4978 Transcriptional regulator, effector-binding domain/component  ali follow..  15  100.............................................................................................................CIAYNFSPEHYFLNLQKLIKYIADRQLTV--VSDVYELIIPIHYSPKKQEEYRVEMKIRIAE........................................................................................ 159
6 -5.120[S] COG4627 Uncharacterized protein conserved in bacteria  ali follow..  10  18............................................................................................................WIHTQEEKLSLLDRSMWEK----TPESISAILAEHVWE-----HLTFREGVEAANICYDFLKP........................................................................................ 73
7 -4.990[S] COG3652 Predicted outer membrane protein  ali follow..  13  47...................KTAPQTFVSEASAA-GVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLEVEDDASLTDKAKATLLDLRDASFDPAYANNQVAAHEKAVELFTQAADNLTDPELQAFAKTPALK-----HLEMARA..................................................................................................... 182
8 -4.970[U] KOG3887 Predicted small GTPase involved in nuclear protein import  ali follow..  13  54.SDPFSTEVKPRILLM-SGKSS------------------QKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQ-------DFPGQIDFFDPTFDYEMIFRGTGALIFVIDQDDYMEALARLHLTVTRAYKV-------NTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSI---------------DHSIFEAFSKVVQKLIPQLPTLEN.......................... 246
9 -4.950[S] COG4094 Predicted membrane protein  ali follow..  18  89..............................................................................................................................IASLIPAGHIATKTKHPSVKIWALAHL.......................................................................................................... 118
10 -4.940[R] COG3552 Protein containing von Willebrand factor type A (vWA) domain  ali follow..  301...HKPRPARPELVVLCDVSGSVAGFSHFTLLLVHALRQQFSRVRV----IDSTDEVTHMFGPESDLAIAIQRITREAGVYARDGHSDYGNAFVSFMQGFPNVLSPRSSLLVLGDGRTNYRNPATDVLADMVTASRHAHWLNP--HLWAVPRYQEVITMHECRSA-KQLATVIDQ.................................................................................... 476

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.