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Query: PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHKIKQMIKYIATLLLTVLFVACNNGKGQQPSEENEDPKAKEILQGIWLDDETETPLMRIIGDTIYYSDAQSAPVYFKILKDTLYTYGKDVTHYQIDKQSEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKSVEIIPTYTEVTKKDSVVMFDGVRYRAYVYINPSQMKVVKTTYSEDGISMDNIYYDNVMHICVYEGKKSLYAKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKGYHYQALVCIPESPVCNLVNLTISFDGKLNITAAKYLast
1 -13.100[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  11  1MVK--KAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKP-MPQSWADCEGIETSLFLEKDGTWYLGAREEPSTWARTADKLVLTDSK-GEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAATFTDCATGKRFMVANNAELERGYLAARGHSE---KPVLLSVEGHFTLEANPDT--TKVLAPDTAGKFYPNQ...................................................... 229
2 -9.990[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  11  1MKPWKALWQIVGGAALAVSLTGCAHQSAEAPVAAVAASVAQSTVHGTVNIRERPDAVVTVTAQKAVRTEGKQAPFTYSLPFNPSDIQPNARVIVSAAITRNGQLLFITDTIQEVINRGAGTQADLL.................................................................................................................................................. 152
3 -9.940[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  11  5MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLN-------------GTEIAITYVYKGDKV............................................................................................................................................................................................................... 56
4 -9.440[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  11  1MRKGC----FGLVSLALLLLVGCRSHPEIPVNDEQSLVMESSLLAA--TSDIQPSASSTLYNERFYWYDARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKVR..................................................................................................................................................................... 120
5 -8.630[R] COG3895 Predicted periplasmic protein  ali follow..  11  1MKNSYSWGRPAKVVLVALILGGLGLAIPSYAQETQTYYCSPTETLTIKMVEGSAIQVTLPDGRTVVLPQAESASNKYS.................................................................................................................................................................................................. 81
6 -8.390[R] COG5645 Predicted periplasmic lipoprotein  ali follow..  10  24FIMIRNVLLAFMICSGMALLGGCSSVMSHTGGKEG-----------TYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLL.......................................................................................................................................................................................... 98
7 -8.120[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  15  1MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTET-DGTYKLEEKNFMSIEVKDGKITKAN........................................................................................................................................................................................................... 87
8 -8.080[M] COG5386 Cell surface protein  ali follow..  12  1MKKLWKKGLVAFLALTLIFQLIPGFASAADSRLKDG---------GEYTTKESSEADKYIDHTATIKVENGQPYMYLTITNSNYWVSTDAANNTRVEKFKLSSLDDIIYSYMHIKVDAISYDHWYQVDLTIDPSTFKVISEPAVTTPV-TLADGIYTIPFVAKKAND---------DSNSSMQNYFDNPAWLKV-KNGKKTVAMTVNDNKTVTALKTQISGALQDVKVVSEDKDANTRIVEFEVEDLNQPLAAHVNYEAPFNG......... 286
9 -7.960[S] COG3521 Uncharacterized protein conserved in bacteria  ali follow..  7  1MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLE----------------SQRLDLSVKASDKVNPDNQKKAAPIEIR---------------VYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAAKSVWRVTYKIPEAPEKAWYSSFISGKGKVQLEAELEQSAIVITERDK......................................................................... 178
10 -7.940[M] COG3056 Uncharacterized lipoprotein  ali follow..  6  30SESPNMFKKILFPLVALFMLAGCAKPPTTTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRD--LRFLLQEVLEKQMTARGYMV---GPNGPVNLQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTD-------------TIADMSQDTSIHEFIKQNAR......................................................................... 226
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;