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Query: PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQNLast
1 -7.490[S] COG4223 Uncharacterized protein conserved in bacteria  ali follow..  12  264.........................................................................................................................................................................................................................................................................................SAAPVDLGPLNEKLAGLDALVKSTGEAAKAQDSRLAALEQSVSQLSGKVEAAAGQPALKSALERGAPFSAELDTLA--ELATLRPYAEKGTEIAS--QNAGFLQNLMSSAQSLVKVRPIPGAPETVARMEVRQGDYAKALSEYNS-LPEAVKAAGADFAGKLKARIEVET. 472
2 -7.430[R] COG5350 Predicted protein tyrosine phosphatase  ali follow..  9  5.....................................................................................................................................................................................................................................................................................................VVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDAFKGTGDLIAPDDAHVLKLIDFAGEWDQSAPLLIHCWMGISRSPAAA---VIAALSLYPDQDETELAQR------LRTVSPYVT--PNSRIIAIGDRLLGREGRLVKAIKA 153
3 -7.420[V] KOG1716 Dual specificity phosphatase  ali follow..  14  52................................................................................................................................................................................................................................................................................................EILPEFLYL--------SYDNASRSELLKTQGISRVLNTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKF--LDQCEK--DKARVLVHCMSGKS-----RSPAVVVAYLMKRKG-----WRLAESHQWVKQRRPSTDISPGKYLDFGLETYLLFLKLLLIAFS. 193
4 -6.740[K] KOG2251 Homeobox transcription factor  ali follow..  22  54..........................................................................................................................................................................................................................................................................................................................................................................TRAQL----DVLEALFAKTRYPD---------IFMREE-------VALKIN---LPESR--------------VQVWFKNRRAKCRQQQQ 106
5 -6.650[P] KOG1603 Copper chaperone  ali follow..  10  2..............................................................................................................................................................................................................................................................................................................................ATDEMKSETKKTEHKQKQSTQIKQDLPPPTIPPLPLPYKSCTLK---SI--------HCEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVIGIISPEILLKK---------NKAGKNAEQLPEIPDPVDNKPKP 117
6 -6.640[R] KOG2893 Zn finger protein  ali follow..  12  3.........RKKKKQLKPWCWYCNRDFDDEKIQHQKAKKCHICHKKLYT-GPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKK.................................................................................................................................................................................................................................................................................................................................................... 108
7 -6.570[K] KOG3815 Transcription factor Doublesex  ali follow..  9  20..........RAPLQRTPKCARCRNHGVLSWLKHKR--YCRDCTEKCILIIER-----------------------QRVMAAQVALRRQQANESLE.................................................................................................................................................................................................................................................................................................................................................................... 84
8 -6.570[K] KOG0484 Transcription factor PHOX2/ARIX, contains HOX domain  ali follow..  16  79................................................................................................................................................................................................................................................................................................................................PEPSGLHEKRKQRRIRTTF-----------------------TSAQL----KELERVFAETHYPD---------IYTREE-------LALKID---LTEAR--------------VQVWFQNRRAKFRKQER 150
9 -6.520[R] COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains  ali follow..  8  377............................................................................................................................................................................................................................................................................................................TSKVYKAEIQQRREAFNRAKMDYDHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALHDTARERQ-----QKFLEGFFIDAASIPGVGPARKAALRSFGIDVTRRGVKQVKGF-----GDHLTQAVIDWKASCERRFVFRPN 523
10 -6.450[K] COG5624 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)  ali follow..  12  336...............................................................................................................................................................................................................................................................................................................................................................LDNGNRLLSKRKLHDLLQQEEKIEPEV-ADEFVESVTNFACRLAKHRKSD-------TLDVRDVQLIRLPGFASDDIVKSARKTTPSYQQKQNA-IGTAK. 445
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.