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Query: PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDPPVCSPWGRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQVLast
1 -9.140[C] COG1141 Ferredoxin  ali follow..  12  49VDEITC-----IGCKHCAHVARNTF-YIEPDYGRSRVIRQ---------------------DGDAEEVIQEAIDTCPVDCIHWVDYTELKNLEEDRKFQVIPVVGYPVDHAVATTEKRRRKQK............................................................................................................................................ 144
2 -8.080[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  25  78IDYDYCK-----GCGICANECPTKAITMVREE....................................................................................................................................................................................................................................... 104
3 -7.180[O] KOG4159 Predicted E3 ubiquitin ligase  ali follow..  13  4FFEPVTTPCGHSFCKNCL-YCPLCKESLKEYLADRRYCVTQLLEELIVKYPIFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQIRNV-------FLPDGRSVVDTVGGKRFRVLKRGMKDGYCTADI................................................................................................................ 181
4 -7.040[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  25  142VMSDLCT-----GCNLCVDPCPTHCISLQPVA....................................................................................................................................................................................................................................... 168
5 -6.980[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  23  252QTPTACSVSGYVFCWKCIVSCPVTHYPISLDDLV..................................................................................................................................................................................................................................... 292
6 -6.940[S] COG2862 Predicted membrane protein  ali follow..  13  12......SRWLLAPVYFGLSLALVALA-----KFFQEIIHVLPNIFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVI........................................................................................................................... 141
7 -6.820[MOT] KOG1550 Extracellular protein SEL-1 and related proteins  ali follow..  11  1MD-KLLSQTDGFGFGIFVIGC---SSQFFNLVFLCCLLLLGLKFLSFKGTSLFLQYLEKINRISPNIEFFNSFNREHKDCNGFISKSHLADGLDQKKPIILHWSSDSTNRLSWENCDLLLLRDGLDHIQNRENTVALSETELDEKNHHSEDEEESQSQNDEDQLLDVITLRTMVKRERKRGDYMKKELEKERRAAESAAEEAMAMLLKLRMEKSVVEMETKQYKRVAEQKQVYDQEVIQSLQWMLMKLD.............. 272
8 -6.650[R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins  ali follow..  1.....................................MPGSPRPAPSWVLLLRLLALLRPPGLGEAAHPQQHICHSALVIRAKISSEKVVP--DPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEA---NSQKQYLLTGQVLSDGKVFIHLCNYIEPWEDLSLV-------------QRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLR. 215
9 -6.540[C] COG1146 Ferredoxin  ali follow..  25  41IDYDKCV-----TCGICFVTCGRRVFDFDKKE....................................................................................................................................................................................................................................... 67
10 -6.290[U] COG3114 Heme exporter protein D  ali follow..  22........WLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQ............................................................................................................................................................................................................................... 53

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.