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current user: public |
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Query: PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 | |||||||
# | Score | Template | Links and tools | %id | First | MDPPVCSPWGRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQV | Last |
1 | -9.140 | [C] COG1141 Ferredoxin | ali follow.. | 12 | 49 | VDEITC-----IGCKHCAHVARNTF-YIEPDYGRSRVIRQ---------------------DGDAEEVIQEAIDTCPVDCIHWVDYTELKNLEEDRKFQVIPVVGYPVDHAVATTEKRRRKQK............................................................................................................................................ | 144 |
2 | -8.080 | [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit | ali follow.. | 25 | 78 | IDYDYCK-----GCGICANECPTKAITMVREE....................................................................................................................................................................................................................................... | 104 |
3 | -7.180 | [O] KOG4159 Predicted E3 ubiquitin ligase | ali follow.. | 13 | 4 | FFEPVTTPCGHSFCKNCL-YCPLCKESLKEYLADRRYCVTQLLEELIVKYPIFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQIRNV-------FLPDGRSVVDTVGGKRFRVLKRGMKDGYCTADI................................................................................................................ | 181 |
4 | -7.040 | [C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB | ali follow.. | 25 | 142 | VMSDLCT-----GCNLCVDPCPTHCISLQPVA....................................................................................................................................................................................................................................... | 168 |
5 | -6.980 | [O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization | ali follow.. | 23 | 252 | QTPTACSVSGYVFCWKCIVSCPVTHYPISLDDLV..................................................................................................................................................................................................................................... | 292 |
6 | -6.940 | [S] COG2862 Predicted membrane protein | ali follow.. | 13 | 12 | ......SRWLLAPVYFGLSLALVALA-----KFFQEIIHVLPNIFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDATSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVI........................................................................................................................... | 141 |
7 | -6.820 | [MOT] KOG1550 Extracellular protein SEL-1 and related proteins | ali follow.. | 11 | 1 | MD-KLLSQTDGFGFGIFVIGC---SSQFFNLVFLCCLLLLGLKFLSFKGTSLFLQYLEKINRISPNIEFFNSFNREHKDCNGFISKSHLADGLDQKKPIILHWSSDSTNRLSWENCDLLLLRDGLDHIQNRENTVALSETELDEKNHHSEDEEESQSQNDEDQLLDVITLRTMVKRERKRGDYMKKELEKERRAAESAAEEAMAMLLKLRMEKSVVEMETKQYKRVAEQKQVYDQEVIQSLQWMLMKLD.............. | 272 |
8 | -6.650 | [R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins | ali follow.. | 6 | 1 | .....................................MPGSPRPAPSWVLLLRLLALLRPPGLGEAAHPQQHICHSALVIRAKISSEKVVP--DPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEA---NSQKQYLLTGQVLSDGKVFIHLCNYIEPWEDLSLV-------------QRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLR. | 215 |
9 | -6.540 | [C] COG1146 Ferredoxin | ali follow.. | 25 | 41 | IDYDKCV-----TCGICFVTCGRRVFDFDKKE....................................................................................................................................................................................................................................... | 67 |
10 | -6.290 | [U] COG3114 Heme exporter protein D | ali follow.. | 6 | 22 | ........WLAVVMTVIPLVVLVVHSVMQHRAILRGVAQQ............................................................................................................................................................................................................................... | 53 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |