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Query: PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIFANLFKKQADADAKVVGNVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNIVLLAKKEPKHKDEEAKALast
1 -6.410[J] COG0097 Ribosomal protein L6P/L9E  ali follow..  12  35....................................................QVLAKEVEIAVKGNEVFVTPAAHVVDRPGRIQGLYWALIANMVKGVHTGFEKRLEMIGVGFRAAVQGSLLDLSIGVSHPTKMPIPTGLEVSVEKNTLISIKGI------NKQLVGEFAACVRAKRPPEPYKGKGI----YENEYVRRKAGKAAKTGKK. 183
2 -6.260[S] COG4103 Uncharacterized protein conserved in bacteria  ali follow..  16  46...................................................SAELLMLFRMILADGTVSESEMVAFRRICKDAFGIQETSIDAVIEYLNEFGYETNGSQAIALFRDLDVERRKQLAQHMAE------AKADSQLAESEVRLLRRTLDLLDISPVDVVKP.......................................... 158
3 -5.970[F] KOG4313 Thiamine pyrophosphokinase  ali follow..  13  64.........SRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGVGYIHKGFTKYLRDFNDIFTFSQYGGHVTLNNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERKFLWIGKRSLAKSTYPGKLDHLVGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVSYMDI--VLFCYDLELPQDFVPTNQDGEVDS 308
4 -5.590[J] KOG3254 Mitochondrial/chloroplast ribosomal protein L6  ali follow..  14  77....................................................LTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGY------DKSEIGQFAATVRKWRPPEPYKGKGV----YSDEIVRRKEGKAGKKK... 223
5 -5.300[T] KOG2059 Ras GTPase-activating protein  ali follow..  12  1.....................MESFLKVAMQYLHGVLGP---INKVFEEKYVELDPSKVEVGCSGLHRPQTEAEVLEQSAQTLRAHLGALLSALSRSVRATFRQLFRRVRERFPGAQHENVPFIAVTSFLCLRFFSPAIMSPKLFHLREKAVQNVGNMDTPASRAKEAWMEPLQPTVRQ---GVAQLKDFITKLVDIEEKDELDLQRT... 208
6 -5.050[E] COG3404 Methenyl tetrahydrofolate cyclohydrolase  ali follow..  13  17...IEDFLEKLASPSPAPGGGA------------SAFVSIVGGSLISMVSQLTIGKKNYAQYDAEMKGILERERQIEKDLRSLIDEDERAFNAIMEALKMPKDTESQKKVREEKLQSALRTGIDVPWKIARKAYDLLALVEPLADHGNKNAVTDAGSAALFLQAAIKAALYNVK..................................... 176
7 -4.990[TD] COG1718 Serine/threonine protein kinase involved in cell cycle control  ali follow..  9TGKAPEIRALKSRAVNRVDSDLGRMEAVKRLKGVEDRRVGSEVFDELTLKTLYKLANSGYLAVLNGAVSTGKEANVDFVAVKIYRVATSDFKKMQYYIQGDPRFKVRTTNRRQLVQAWVNKEFRNLKRALEAGVRVPEPVTARDNVLIMEFIGK--APPEDPEEALETIIEYMHRLYKGARLVHGDLSFF--NILN............... 218
8 -4.910[G] COG0296 1,4-alpha-glucan branching enzyme  ali follow..  15  257ISIYEVHAGSWQRREDGTFLSWDELAAQLIPYCT-----DMGFTHIEFLP----------ITEHPYDPSWGYQTTGLYAPTARFGDPEGFARFVNGAHKVGIGVLLDWEHGLRWFDGTALYMSYLINNALYWKFHLDGLRVDAVASMLYQKMNSLVYGTHPGVMTIAEESTSWPKVSQPLGFGFKWNMGFMHDTLSYFSREPVHRKFHHQE 519
9 -4.870[L] KOG3752 Ribonuclease H  ali follow..  15  1..........................................................MSVVLVRLEIGLLE-----------YKLQFSYQQKCGREKLRPCSPLG-----VFPFPAFCIQICMY---LLRF-FTILSTFSSIIFFIIFKSISRIGDFHIFMNRVLARFCSSI-------SCSQRFTEEELQAIIELKRRSERILDKAAQN 130
10 -4.840[S] KOG4308 LRR-containing protein  ali follow..  13  147...................YAQKEELLLEEIYMDTIMELSLNSLACLLDHTTGILNEQGETIFILGDAGVGKSMLLQRLQSL---ATGRLDAGVKFFFHFRCRMFSCFKEALFTFDGLDEHPLVLLANLLSGKL-----LKGASKLLTARTGIEVPRQ--------------LRKKVLLRGFSPSHLRAYARR.................. 363

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.