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Query: PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg], from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAYLast
1 -8.100[R] COG2351 Transthyretin-like protein  ali follow..  10  16PGKDLAITLFKIVNNLRQPIKTVRTNHDGRCE-ALQAGIYELDFAVGDYYRAAGVSLPDPDVVTLRFGVADAGA....................................................................................................................................................................................... 98
2 -7.720[P] COG5266 ABC-type Co2+ transport system, periplasmic component  ali follow..  19  185PLPNATVTATFDGFDT---AFSDSTDDKGEVDIIP--GFWKANVEHKTDFPDQSVCQKQANYSTLTFQ............................................................................................................................................................................................. 262
3 -7.570[S] KOG3306 Predicted membrane protein  ali follow..  14  58KFSNVKVILNGGQKITF-------LRPDGYFTFHVPAGTHLIEVSAMGFFSPVRVDVSARHRGKVQATLTETRRSLTELIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLM--ENIDPEEMKQAQEEMRRQGVPSLTSLLPGAGAS.............................................................................................................. 197
4 -7.240[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  9  56LLNDTVISIN--------TPSQSMVAKDGIYSFELAPGDYAITARYYRNNTLIYIEGEGNYVFDLLLYPVSEYPVTEPIQDSYSIDPPETKFDIPGILVKVPGRSTGLGVRSESSGGAVSLTEPIIEPAGNPDIETAALNRIPLSPELCEVLDIIRGHKGRITQKDLRSKMLSELEKRGLIR........................................................................... 294
5 -6.290[S] COG4104 Uncharacterized conserved protein  ali follow..  22  125PVAGRRVRVWSSG-----WNAFDTTDADGMTS---------------------WIERPTAEILYIDLVQRCDA........................................................................................................................................................................................ 172
6 -6.120[J] KOG2783 Phenylalanyl-tRNA synthetase  ali follow..  8  257PSFQLEIDLEILGCGVVQDRLLKGAGLNNYIGWAFGIGLERLAMILYGIPDIRLFWSLDERFSK-------QFLPNKISTFKPFSKYPACFKDI-----------------------------AFWINNDFNP-NDFYEIIRDVCQDMVESVNLIDQYTAKSGKTSLCYRVNYRSMERSLRNEEIDKLQEKLRNRVANS.......................................................... 423
7 -6.050[C] COG2421 Predicted acetamidase/formamidase  ali follow..  11  213.SPGSKIYFPVFVEGALFSV--------GDAHYAQGDGEVCGTA----------IEMGATATLRFGVISEGAKKYGIRF---------PIFKPSESSVRRFTHSK------------------AVTGVGVIDSLNESENATLSAKHALLNLINLLEKAGYTREQAYLLASVAADLRLSQLVDVPNFTVTAFLPLDI............................................................. 364
8 -6.030[MOT] KOG1550 Extracellular protein SEL-1 and related proteins  ali follow..  10  1....MDVYFFVMEITSFLKLLS-QTDGFGFGIFVIGCSSVFLCCLLLLGLKFLSFKGTSLFLQYLEKINRISPNIEFFNSFNREHKDCNNNNNNNNNNNG-HWSSDSTNRLSWENCDLLLLRDGLDHIQNRENTVALSETELDEKNHHGESEDEEESQSQNDEDQLLDVITLRTMVKRERKRGDYMK...................................................................... 208
9 -5.630[C] KOG0761 Mitochondrial carrier protein CGI-69  ali follow..  8  239PIEMVRIKMQSMTYAELWRVLRSLIRQHGILGLWRGWPPTVMRDAPFSGTYWAVYEAIKRAFSVTEPTFLFSFLTGAISGAVATFVTMPFDLITTHTQIELGQDVLYEEIGAGTGAGTGTGAGARPKTPQSAVANSRPSVL-------SRMRQIYRLQGVRGLYVGVMPRMLRVVPACAIMISTFEYSKSFFFH............................................................... 427
10 -5.520[S] COG4675 Microcystin-dependent protein  ali follow..  13  29DISSNEILYALLGYGGDGRTTFALPNLQGALPVGQGQGP--------GLTARTIGQHLGVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATVPNPQ........................................................................................................................................................... 124
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205