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Query: PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete), from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SVLDGFEAVGEKTTTNKMTMTVMESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENAIKFCKTKRSKADGVDSDAAGKASSVTVRTTDVLVAVQKYFTFPPVADDQIAYFAMDGESYPDEKVVIFAVADASKGVSGKRGPRKLast
1 -7.100[S] COG5462 Predicted secreted (periplasmic) protein  ali follow..  14  28......EDQLAAVQKIHNQIRYEEETIDLLKADWSLLTQPSRLQKLAELYKSQLALEPVSARQ........................................................................................ 84
2 -4.570[T] COG2336 Growth regulator  ali follow..  9  10......................NSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCPTVRRGWAEAAAMLVETEQE........................................................................... 63
3 -4.390[S] COG4704 Uncharacterized protein conserved in bacteria  ali follow..  14  90.AVAAIQDLNGDGTLNRNDLGMPVEPFGFSRNPEVRTSAPKFAAFILAGRNTTIQVQ.............................................................................................. 147
4 -4.360[S] COG4811 Predicted membrane protein  ali follow..  11  88...............RVPKIIFKQKGFFFANSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKI.................................................................................... 144
5 -4.280[T] KOG3865 Arrestin  ali follow..  7  5DKKSGTRVFKKTSPNGKITTYLGKRDFIDRGDYVDLIDGMVLIDEEYIKDNRKVTAH.............................................................................................. 61
6 -4.250[R] COG5401 Spore germination protein  ali follow..  8  131...ADTTVNVDIKKDGTAIADFSNEFKNYKKETLTQFSSIDKVKLRINGHEETAGVNDLTATHPLTVYYLAENEDSEYYVPVTKRIDNSEKDDITAAINELAKGPSKVSGLLTDFSEDVKLVSKPKIKDGRVTLDFNQS............ 300
7 -4.180[P] KOG1530 Rhodanese-related sulfurtransferase  ali follow..  17  229......EAFEQNVFTSSPSCTIEQLLLALLQTSLSPFGHSANIRLFF........................................................................................................ 270
8 -3.990[S] KOG2632 Rhomboid family proteins  ali follow..  16  351.........RQAPIANAAVLPQSQGRVAASEEQIQKL-----VAMGFDRTQVEVALAAADDDLTVAVEILMSQQ............................................................................. 410
9 -3.960[S] COG3494 Uncharacterized protein conserved in bacteria  ali follow..  9  136...FGFKVVGAHEVVPDLLSP-ERRNIALAMDAALKLGDLDVGQGAIAAGGRVVALEGAEGTDLMIERVRELRTAGRISRRGGVLVKMAKPRQDERADLPAI------GLSTVENAERAGLAGIAIEAGRTFILGFGETLAAANKKG.... 285
10 -3.940[NU] COG3215 Tfp pilus assembly protein PilZ  ali follow..  11  14.....LTLKDRAALYSAYMMYMQNGAIFVPTPKRYFLGNEVFLLLTLPDSSERLPVAG............................................................................................. 66
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.