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Query: PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRNYFFTMLAAVLLAVAGANAQESAEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETWKRVGMPAKFPEDLVLast
1 -13.800[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  15  2VKKAIVTAMAVISLFTLMGCNNRAEVDTLSPPMPQSWR------------ADCEGIETSLFLEKDGTWVRYLGAREEPSSFASYGTWARTADKLVLTD-----------SKGEKSYYRAKGDALEML................................... 120
2 -13.100[S] COG5514 Uncharacterized conserved protein  ali follow..  12  1MKKFIIASLVGISAALPLPTHAETNKAPENSTLVGTWK--KHEVFRVRDNGKFHDQRGCLIYDKKNNTVYNTFCIPRAVCVVAEGPAGETMSLETKENGIAESSYMAKNDKKFSFEIDLSGDQLQYT-QVTSLQVYGQPFEHVDTSTLEKVK.......... 216
3 -12.400[S] COG4731 Uncharacterized protein conserved in bacteria  ali follow..  11  50MIRTAMIAATALAASLAASAPAF------AADVVGLWA-------------TPGNGGQVEISRCGNSLCGKLVTSDHIKTNPGLNLQMLYDFSGGPTKWTGGKVYNPEDGGVYAGTIELVSTTELKLK----------------TQKWTRIR.......... 191
4 -11.200[O] COG3187 Heat shock protein  ali follow..  16  5FSRTLFFAAIMGGFALAMGKAQPFFPSNSSQSLQGTWYISGWPSAPGSAPITLQFKGAPHSGSLRDRL------TGTAGCNTFNGAYTSGDGNLTINQALATTRTAEVMAQEQRFSYSIGNDGQLTLTYLKDGEIPANQYSALHNSQWE............. 175
5 -10.800[M] COG3040 Bacterial lipocalin  ali follow..  10  1MRLLPVVAAVTAAFLVVACSSPTPPKGVTVKRYLGTWYEIARLDHRFERGLEQVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGSPN.................................................................... 100
6 -9.650[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  10  1MRKGCFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESSLLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDARG-LEMHPLERPRSAVTLYGSANFLGAHKVRLYLYL........................................... 125
7 -9.210[S] KOG3306 Predicted membrane protein  ali follow..  14  7IRSTLAFIVLQICFIFFASTFPCSSGSEDSYTITGR-NVIGHIAKFSNVKVILNGGQKITFLRPDGYFTFHEVPA---------GTHLIE........................................................................ 94
8 -8.760[R] COG3042 Putative hemolysin  ali follow..  13  1MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNNCKLPGGE............................................................................................... 67
9 -8.740[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)  ali follow..  9  1MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVSAITRDGRPIVFVERIKNKT-MLNSGKFRFVDMDAVRDQLNFQNNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRL........... 169
10 -8.300[S] COG4907 Predicted membrane protein  ali follow..  10  1MKKNILRIFLFLIISIISFSASFSISDLDVEAKLGSMLVSEAVTYDIDEAKGYGGITSLQVFEDEGHYENNVISYREVD----PVNYEVTENDGVYRIKLYSKNYNN---RTFKFVYTLPEAIKVYNDVAQ--KMVGQDWQQGISTVKVTIELPVSNDYD.. 167
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;