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Query: PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGWKQYLast
1 -7.440[S] COG5373 Predicted membrane protein  ali follow..  9  1MLEAIALLAFVMALAAFL-SAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGRWPVWVGGLALALGGYFEALSPAVRLTRRDVPAIADRFRNAMIPGVLTAAGAVTLFGVVYA----AYGIYDFIGTGAA........................ 223
2 -6.930[S] KOG4463 Uncharacterized conserved protein  ali follow..  7  179......FLGWTMGMFYHLSLLPGTSWRLPIRFVKPALSPTHVFIRPPYSDMQNASTFNPETLFALPTGLDAERTENENQVENPVSNADANDSPTRQNARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIMQTSRAQAIQALSQTNDVQRAVELLLEQTAD........................ 371
3 -6.760[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  8  65....................................ESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGEQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWDKFREDEQAPKSRQELIALY-------------------GYDIRS. 246
4 -6.600[R] KOG3339 Predicted glycosyltransferase  ali follow..  8  1MKTAYLASLVLIVSTAYVIRLIAILPFFHTQAGTEKDTKDGVNLLKIRKSSKKPLKIFVFLGSGGHTGEMIRLLENYQDLLLGKS---IVYLGYSDEASRQRFAHFIKKFGHCKVKYYEFMKAREVKATLLQSVKTIIGTLVQSFVHVVRIRFAMCGSPHLNGPGTCCIISFWLKIMELLLPLLGSSHIV--YVES-LARINTPSLTGKILYWVVDEFIVQ.. 218
5 -6.600[S] KOG2422 Uncharacterized conserved protein  ali follow..  10  4....................................RLLKKVLQEHEDSKLQKHHEEEEEEDEEESGARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQSSVADHVQPVSKNKSKKKKKKKNKESGSNVPKAEMTLDETLEALGLNANSKQDKVQETKPNADSSKKASRFVLEIDSKYLNLENELRRTYGSKAMRSFESESGSQGGSSS......... 182
6 -6.270[R] COG2985 Predicted permease  ali follow..  7  168...........ICGILLTMWLMRLIFRVNVEAEAQKHESSLANGHSLIQTMNIRVENPNLNNMA-ICSRLKRDDTLMVPSPGTIIQAGDLLHLVGQSTDLHNAQLVIGKEVDTSLSTRGTDLRVER--TNEKVLGKRIRDLHVISRLNRAGVELVASSDASLQFGDILNLVGRPASIDAVANVVGNAQQKLQQVQ............................ 370
7 -6.090[P] COG2156 K+-transporting ATPase, c chain  ali follow..  8  4LRPALSTFIFLLLITGGVYPLLT---------TVLGQWWFPWQANGSLIREGDTVRGSALIGQTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVELVTAS----ASGLD-NNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYI-----GQPVVNIVLNLALDKLDE.................... 190
8 -5.800[S] COG4863 Uncharacterized protein conserved in bacteria  ali follow..  8  1MKKTILLTVLVVISLVFTWGIWTFQPNFSEG-----SSSTESTVRVKHKIEKTTQKLSETVRPRDMFIHDD--------GAHYKVDDNALYEEIWSDLPHWDVKGIKDISDQYDKAGFKSWFYGIGGSEAKFSDTIPIDIFQTLFKWSNQSFEYSSFDETKANKKIYLVSYSKQLILEVTVESANYRNIMNDLKNR........................... 198
9 -5.430[O] KOG2884 26S proteasome regulatory complex, subunit RPN10/PSMD4  ali follow..  4  210.....................................................PSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEED...... 375
10 -5.420[A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)  ali follow..  16  11....................................................................HRKRKARSATSKREKENQKLERNGPANEDLASISSESEFNGFEDEIDEENEDTYETAAEKRLRLAR----EYLDEVKNELVEDGGFDAKEVDRELLASRLKE..................................................... 108
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.