current user: public
If you have questions about the server, please let us know.

Query: PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;, from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst MKSRIISLGLVASLVCLLPQVAEAQIAASNPLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSHWHRAAALVLast
1 -10.500[U] COG5314 Conjugal transfer/entry exclusion protein  ali follow..  12  2MRRRFLSGLITLSLIAKPYVQPAYALIVFDPSNYAQVLTAARSLEQINNQIQSLQNQATVLQNMARNLQGLDFSSVGQLTGSLQRIDGLMDQASGLSFDLNKLQDQWRNQSAARDRWQSAMQAFRQTMGVQSQIVENVRGDGDLLADLVNRSQGAGALQASQATNQ--LLALSTKQQMQIQTLL.............................................. 203
2 -9.180[R] COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein  ali follow..  12  1MTVFKKILAFTGSILLVIILGGILTSLIHSGLVIATIVIAVAAILFFFSSKAGDRAQMIA-TGLTKKEYKYIRTNLEEARVKIIRLQKIMTQNKA-LYSFQERNKTLLLTKRIYGIVKEEPKRFYEAEDFFFSHLDSLVELTEKYAFLEK--------QPVKDKKIYQTLSDTRTLLNDLSRVIEKDLFTLLNQDVNNL----------DFELEVAKNSISK........ 202
3 -9.160[S] COG3184 Uncharacterized protein conserved in bacteria  ali follow..  11  1MNIKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEKNMIEGFNAGFKPYADKALAEMPEAKKDQAAEAFNRYRENVLKDLITPEVKQAVRNTLLKNARTQEEIDGMIAGSPVGQSVVAKNPRLIKKSMSEIAVSWTALSGKIAQHHLPEFTEELRRI............................................................... 172
4 -8.140[M] COG2825 Outer membrane protein  ali follow..  10  1MKKWLCAASLGLALAASASVQAADKIAIVNVSSIFQQLPAREAVAKQLENEFKGR------ATELQGMERDLQTKMQKLQRDGSTMKASDRTKLE-NEVMKQRETFSTKAQAFEQDNRR---------RQAEERNKILSRIQDAVKSVADVVIDANA--VAYADSSKDITADVLKQVK.................................................... 165
5 -6.730[NT] COG3143 Chemotaxis protein  ali follow..  7  52........................................RDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLM............................................................................ 165
6 -6.350[R] COG3700 Acid phosphatase (class B)  ali follow..  9  1....MKKITLALSAVCLLFTLNHSANALVSSPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTG-RPPMAVGFDIDDTVLFSSPGFWRGKKTYEKMNNGWDEFSIPKEVARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLA-MNPVIFAGDKPEQNTKVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILR................................... 212
7 -6.300[YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component  ali follow..  6  590................................RVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELP--VLSDSERDMKKELQLIPDQLRH----------LGNAIKQVTMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKEEIREMVKQINDIRNHVN...................................... 740
8 -6.250[U] KOG3691 Exocyst complex subunit Sec8  ali follow..  7  19.............................DPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDEL--IVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVL----NLLDEIENIKQVPQKLECMASKHYLSATDMLVSAVESLEGPLLQV-------GLSDLRLELH-----SKKMNLHLVLIDELHR..... 198
9 -6.170[S] COG5345 Uncharacterized protein conserved in bacteria  ali follow..  7  214...........................YFGLDPFGPKTPTPSYYRAAIRSFQAFNGELTACKAVFDTRADNLIQFIDRIAGDIGSTSAILRERTRADDRFWFAYGQLYGYYGVLSAAGSDFAQVIRERNLTNLWNDTLSQTRAALRIQPAIISNGEESGWLMPSHLATMVLRVRSNLVELRSVLDR............................................ 385
10 -6.050[R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding  ali follow..  8  29..............................QKELAKVQSLKSDIRRKVQEKELEMENLKTQIRDGENRIQEISEQINKLENQQAAVKKMDEFNALTQEMTTANKERRSLEHQLSDLMDKQAGGEDLIVSLKESLASTENSSSVIEKEIFESIKKINEEGKALLEQRTELKHATNPELLSIYERLLN............................................ 184
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.