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Query: PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGVIKAQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTVGYRARDERWSSSINYEGKSFEGLLGKEVTIQSNGNVPSGRKVFVRAAARINYDTPVGSGTRRWNYSEPMELast
1 -26.300[S] KOG3306 Predicted membrane protein  ali follow..  15  7IRSSTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIP-PSNVIGHIAKFSNVKVILNGGQKIT--------FLRPDGYFTFHEVPAGTHLIEVSAMGYFFSPVRVDVSARHRGKVQATLTETRRSLTELI..................................................................................................................................... 132
2 -20.200[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  10  16IAALLTLLASASLALGVPFLEDN-----NVTATVHGATYAKDTLELLN------DTVISI--------NSTPSQSMVAKDGIYSF-ELAPGDYAITARYYRN------NTLIYSKETTFKIEGEGNYVFDLLLYPVSEYPVTEPIQDSYSIDPPE................................................................................................................ 144
3 -12.100[R] COG2351 Transthyretin-like protein  ali follow..  13  2...............................GRLTTHVLDTAAGTPG------KDLAITLFKIV-NNLRQPIKTVRTNHDGRCE-EALQAGIYELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAVPLLVSPW................................................................................................................................... 109
4 -11.100[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit  ali follow..  13  56........................DKAHGERITIKGRVIDG-MGAPLR------DALVEIWQADYNSPNESRGKPSNMETGEFIFETIKPGRVPFRDMAPHVTLWIVARGINLGLQTRMYFSDEEAANAELARIEHRMRVPTLIGQREGDVYHFDIHLQGEKETV...................................................................................................... 210
5 -10.600[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  13  8.ALWQIVGGAALAVSLTGCAHQSAEA-SVAQSTVHGTVNIRER--ALPPDAV---VTVTLSDISLADAPSRVIQKAVRTEGKFNPSDIQPNRVIVSAA---FITDTIQEVINRGAGTQADLLLVPVPSVALEIVP.................................................................................................................................... 165
6 -10.000[P] COG5266 ABC-type Co2+ transport system, periplasmic component  ali follow..  10  159......................EIVPLDNPANIHVGERFKVRRGEPL------PNATVTATFDGFDTSDRSAFSDSTDDKGEVDIIPLRQGFWKANVEHK--DFPDQSVCQKQANYSTLTFQIGHS............................................................................................................................................. 266
7 -9.780[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  12  2VKKAIVTAMAVISLFTLMGCNNRAEVDTLSPQSWRGVLPCAD-----------EGIETSL---------------FLEKDGTWVMNERYLGA-------REEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKG----DALEMLDREGNPIESQFN.............................................................................................................. 132
8 -9.750[M] COG4932 Predicted outer membrane protein  ali follow..  11 1290..............................TGTVVLTKKDSATNAEL------ADATFELRN---ESDTLVRENLVTDDNGEISVADLAPGDYKLI-APAGYQLDATPVNFTIDFNQSEAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDD................................................................................................. 1422
9 -9.500[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  11  1MRKGCFGLVSLALLLLVGCRSHPEIPVNDEQSLV---MESSLLAAGISAEKPVLSASSTLYNERQEPVTVHYRFYWYDARGRPRSVTIPAHKVRLYLY......................................................................................................................................................................... 124
10 -9.440[S] COG3111 Uncharacterized conserved protein  ali follow..  14  1MKKFAAVIAVMALCSAPVMAAEQKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGTPKDTVEIQGEVDKDWNSVEIDVKQIRKV........................................................................................................................................................................... 128
11 -9.100[S] COG4704 Uncharacterized protein conserved in bacteria  ali follow..  12  1MRKKWAVSLILLTTLGNLAWSWSARANFNGKLTVEIDGLKNKQGQ----------VCVSIFTSSQGFPGDRKRVFDNETPLKLTFNNLKAGTYAVAA------------------------DLNGDGTLNMPVEPFGFSRNPEVRTSAPKFGDAAFILAGRNTTIQVQ................................................................................................... 147
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24