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Query: TM0015 TM0015 281896 PDB-2007-09-14, from JCSG0516

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVAKKYFEIRWHGRAGQGAKSASQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIRVRSAVENPDVVVVIDETLLSPAIVEGLSEDGILLVNTVKDFEFVRKKTGFNGKICVVDATDIALQEIKRGIPNTPMLGALVRVTGIVPLEAIEKRIEKMFGKKFPQEVIDANKRALRRGYEEVKCSELast
1 -2.670PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  12  14........................................LKEYGKNIQ---VDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEHTTKLWDHLFIMSNFKLDVDT-IAVLGRKPERVPYNHNKLKYKHYGK------NINLLIEQAILKEDGAEKEDAIIYLGRLMKRLYSTWNKENVD.......... 154
2 -2.550PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  14  52..........................................................................................................ARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAAS........ 129
3 -2.220PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  7  128........................................TPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPF--------------FNVWSQGKVCTGNAAMP-----------VGDNAAIPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTEKPLPVFPEGRLVDLPLTVADLLAPDLNQK 254
4 -1.880HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  10  14................GNGILAFAVIFVVVIFV---MSMRLQQQKAENRNFIETYTITLTKGFAGDSTSIFINDSLLVMTEEPFILEVKRFAEQSALMIVNNATE....................................................................................... 103
5 -1.790PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  16  20QTILKDAAATALYGRGANGVVL---ITTKSGRRGKTHIAFTAEYGTSDFATP............................................................................................................................................ 69
6 -1.750PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  22  1...........WSVREGELLDEAVDFCRKRGLEFYAVNSNMPEEEADMSALKVSADMYIDDRNLG............................................................................................................................... 57
7 -1.720PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  14  6..........................................................................................................................................NIVLVLCAAALIYICYSSIMGPINFEKAKKEREQAVIARLIDIRKAQQEYRSLH 59
8 -1.560HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  9  71.............................................................QANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSL-TNRSLEQLASMRVQAVEAKFQDVSPNE 210
9 -1.550PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  12  16RGQKNGCTVYQLKGEGGSGEMVCYDIA---------------------------------------------PGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGC---EVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLRKYRGVTLFLEVEKAQHTLSAGFPAGIVNELCGKEQSLLVKSREDVE... 165
10 -1.510PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  13  69.................VAFLAVAAIFGVLWFVE---LTYFPILGS---AAMYQAFMIGNISNKLVPAAIVAQSSI--AKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYI-------SLMGAVL.............................................. 186
FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 2 9 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.