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Query: gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRTERLNELFFVYHKNLKNQSKSKYSRAVNYLKRRGFNLQDFLKVGGGVGYLQNKEWLNLPLYSFDGNLIGFLNRKVSYKKEFLYTPFNKPPSKSEAFVGLRELVIKDNSIYLVEGDFDWLAFRKAGILNSLPLCGLTISNQQVQWLKQKKIKKIFICFDNDLAGKNGAKNLKEYLTKQGFITKVIEIKAAAKDWNDLFLLNNSNWSAVLTNQLLFLast
1 -63.400[L] COG0358 DNA primase (bacterial type)  ali follow..  18  154.GLSGEIVQKFGIGY-------IADEWDLVRRNFGQQRSSEDMLVTAVMGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQTPKYLNSPETPIFHKGKELYGLYEVYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDHLQLLF-RQTNHVICCYDGDRAGRDAAWRALENYLKSGNILKFLFLPD-GEDPDSYVRKYGADFEQQVANATPL 375
2 -29.400[L] COG1658 Small primase-like proteins (Toprim domain)  ali follow..  15  4..........................................................................................................KQKINEVIVVEGRDDTANLKRYFDCETYETGGSSIDDRDLERLKREDKRGIIVFTDPDFQGERIRKI----IMQAVPNAKHAFLN-RDEARPKGKGSLGEALNQALAEVFG. 116
3 -18.400[L] KOG2373 Predicted mitochondrial DNA helicase twinkle  ali follow..  12  148...........................PEACAALGIKGLKEDQLNAIGAQ--WEPQQQLLHFKLRNAAQVEVGEKVLYLGDRREEIFQSSSSS-----GLLIHG--AMNKTKAVLVSNLIDFIVLATQNIETCLPYELKTLPQECLPALER--FKELIFWLHYDASHSWDAARAFALKLDER---RCLLIRPTETEPAPHLALRRLNLRHILAKATPV 329
4 -13.500[S] COG4643 Uncharacterized protein conserved in bacteria  ali follow..  13  605...............QEAVAQRVVKQMDDLVTYLKAKGITPQAGIYT------DSDGQKTYIPAIDSDGKQWTMQYIQEDGTKRFAKGGRKE----CFHPIGGLAAIAAAPVIVIGEGYATVAQVSQALGYGTVAAFDAGNLEGVAKALHKTFPDPILIAGDDDNPGKTKAQEAARAFFPIFAPGEQADNPKGFTDFNDLATKSAEAVERQVHAAVS. 817
5 -7.890[L] COG0353 Recombinational DNA repair protein (RecF pathway)  ali follow..  13  23......................................................KSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGFSGRYFVLMGHLSDRLEQRLASEKISELILATNPTVEGEATANYIAELCAEAG--VEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKI 199
6 -7.420[H] COG2896 Molybdenum cofactor biosynthesis enzyme  ali follow..  7  1.................................MRNVQAQPLVSPTEPMIDPFGRAVTYLRVSVTDRCDFRCTYEHMTFLPKKDLLTLEELDRLCSVFIEKGVRKLRLTGGEPLVRKNIMHLIGNLSRALDELTLTTNGSQLARFAGELADCGVRRINVSLDT-WGDLSRVLEGIDAAQKAGIHVKINAVALKDFNDAEIP................. 186
7 -6.940[L] COG3593 Predicted ATP-dependent endonuclease of the OLD family  ali follow..  12  261............ILFEDPDARLHPRMVAIMWELVSY--LPVQRITTTNSVELLSQVNLNAICRLVRTPEKINCFQLRRKDLGKEDFRRLTFHIHNRSLALFS--------RMWILVEGESEVWILEMEGI-RIVEFAQSGLKP--LKYVQAMGIQWYVLT-DGDEAGKKYGEIVEDMLDEEMVRADRITILPKRDIEHFFYANGFAD........... 454
8 -6.940[F] COG3363 Archaeal IMP cyclohydrolase  ali follow..  7  2.......................................................YLGRILAVGRNSNGSFVAYSSRSFPNRTTSIQEERVAVVPVENPYIAYNCIRIVGDTAVVSNGHTDTIADKVALGMNLRDAIGLSLLAMDYE--DELNTPRIAAAINGSEAFIGIVTADGLMVVPEETPVYISTYEQTEPAATEFKAGSPEEAAEFILKGGEF 176
9 -6.900[AR] KOG2191 RNA-binding protein NOVA1/PASILLA and related KH domain proteins  ali follow..  11  53..........................................................KVLIP-SYAAGSIIGKGGQTIVQ--QKETGATIKLSKLSKS----DFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTQVKIIVPNSTAGLKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEP--EQNRKAV.. 237
10 -6.720[R] COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme  ali follow..  9  92...................................................................................................ITGGDPLARLSRTVEYIR----LKEEFGKKFHIHLYTTGILASEEALEKLYDAGLDEIRFHPDLNSKFFEREIENMKKAFDFGWDVGGPAVPGFEDRIKWFASLLDKLGAKFLN..... 207
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.