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Query: gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGKLast
1 -118.000IDP01354 gene: trmE; tRNA modification GTPase TrmE VC0003 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  28  13..TTDTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRT--LRPRYAEYLPFTDEDGQQLDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIGVRPARPGEFSERAFLNDKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDIWPDFVDKGITVIRNKADQTGEPLIRLSAKTGQGVDALRQHLKECMGF--SGNQEGGFMARRRHLDALERAAEHLAIGQQQLEGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 464
2 -116.000IDP04649 gene: trmE; tRNA modification GTPase TrmE [Francisella tularensis subsp. tularensis SCHU S4] FTT1283 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  29  1MYTKDTIVAIATPQGNGGIGIIRISGIDALAIAEKLTKKQ--LKPRYATFCNVYN-DNEIIDHGIIIFFKAPLSYTGEDVVEIQAHGNPFILNLIIKAALNCGARMAKAGEFTERAFLNNKLDLAQAEAVADIINASSEIAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASIDFPEEEINFLEDQKIHSSLEEIYKVILAVKNSCKQGVILAEGITLILVGKPNAGKSSLLNALAGKESAIVTSIAGTTRDIVKEHIQINGVPMHIIDTAGLRNSDDIIESEGIKRAIKKIQEADQVLFVTDDYTNSQVKFSDIKEIIKDIDITYVHNKIDLLKENHIYISAENNIGIDKLKEHILNKVGY--TNQNESIYTARERHVTAINNAFEHIKLAKEQLELG-NGELLAEELLIVQEYLNSITGEFSSDDLLGEIFSSFCIGK 450
3 -29.500IDP02160 GTP-binding protein [Coxiella burnetii RSA 493] CBU_1245 [Coxiella burnetii RSA 493]  ali follow..  17  5..................IAIVGRPNVGKSTLFNYLTKSRAAL---------VADVPGVTRDRQYGETTIDSQRLLLVDT---------------------GGLVDTENKEVAPLAETQVEQAIDESDCILFLVDAKA------GLVPADEIIAERLRKKGKKIFLAVNKADVQSDFYKLGFGEPYVIAAASGVKDLMTQVLENLPEEKEVIEKEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIAGVSLIIAVNKWDGLNIEEYFISALHGTGVGKLFRAIQESYQSIQQELTTGQL.................................................................... 357
4 -29.300IDP04257 gene: engA; GTP-binding protein EngA [Clostridium perfringens ATCC 13124] CPF_2008 [Clostridium perfringens ATCC 13124]  ali follow..  16  6..................VAMVGRPNVGKSTLFNKLAGKRISI---------VQDTPGVTRDRVYAESEWLNRKFTMIDT---------------------GGIEPESSDIIVKQMRRQAQIAIEMADVIVFVVDGKE------GLTAADQEVAQMLRKSKKPVVLVVNKIDRSYEFYNLGIGDPITISASQGLGDMLDEVVKYFNDPSEDEEDDEYIRIAMIGKPNVGKSSLINRLLGEERVIVSNVPGTTRDSIDSYLETEDGKFILVDTAGLRKVKEEIERYSVIRTYAAIEKADVAILVIDAEQGITEQDEKIIGYAHEKAIMVVVNKWDLIEKDDLFISALTGQRVHKILSTAKYCYDNYSKRVSTGLL.................................................................... 360
5 -27.700IDP04530 gene: engA; GTP-binding protein EngA [Salmonella typhimurium LT2] STM2519_1_490 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  5..................VALVGRPNVGKSTLFNRLTRTRDAL---------VADFPGLTRDRKYGRAEVEGREFICIDT------GGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKTDGGLGEIYPIAASHGRGVLSLLEHVLLWMDDVAPQEEVDEDAEYWAQFEAEQNGEEAPEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKITDAVEKFSVIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFISGRSLVIVVNKWDGLSQEVHFISALHGSGVGNLFESVREAYDSSTRRVSTAML.................................................................... 384
6 -26.800IDP06265 gene: engA; GTP-binding protein EngA [Streptococcus pneumoniae TIGR4] NP_346147 [Streptococcus pneumoniae TIGR4]  ali follow..  16  6..................IAIVGRPNVGKSTLFNRIAGERISI---------VEDVEGVTRDRIYATGEWLNRSFS----------------------MIDTGGIDDVDAPFMEQIKHQAEIAMEEADVIVFVVSGKE------GITDADEYVARKLYKTHKPVILAVNKVDNALGLGE-PISSVHGIGTGDVLDAIVENLPNEYEEENPDV-----IKFSLIGRPNVGKSSLINAILGEDRVIASPVAGTTRDAIDTHFTDDGQEFTMIDTAGMRKVYENTEKYSVMRAMRAIDRSDVVLMVINAEEGIREYDKRIAGFAHEKGMIIVVNKWDTLEKDNIFVSALTKQRLHKLPEMIKQISESQNTRIPSAVL.................................................................... 359
7 -26.100IDP04510 gene: era; GTP-binding protein Era [Clostridium perfringens ATCC 13124] CPF_2272 [Clostridium perfringens ATCC 13124]  ali follow..  22  1....................................................................................................................................................................................................................MFKSGF-ITIVGRPNVGKSTLTNLLMGEKLSIVSNKPQTTRNNIQTILTGEDYQMIFVDTPGIHKPKHKLGEYMVNSATDSIKDVDLVLFLSNPCEEVGRGDKFIIEQLKKAPVIFVLNKVDESSPEKVAISAMKAKNTDKLLELMVKYLPEGPKYYPDDMITDVQERFVVAEIVREKALKNLSQ-EVPHGIAVDVIQMKQDDNGKYNIEVDLICEK------KGIIIGK 244
8 -25.400IDP00678 gene: era; GTP-binding protein Era SACOL1624 [Staphylococcus aureus subsp. aureus COL]  ali follow..  20  9...........................................................................................................................................................................................................................VSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKKTPVFLVLNKIDLVHPDELMISALEGLNVDHFIDVLKTYLPEGPKYYPDDQISDHPEQFVVGEIIREKILHLTSE-EIPHAIGVNVDRMVKESEDRVHIEATIYVER------KGIVIGK 246
9 -24.200IDP02682 gene: era; GTP-binding protein Era [Coxiella burnetii RSA 493] CBU_1502 [Coxiella burnetii RSA 493]  ali follow..  22  9...........................................................................................................................................................................................................................AAIIGRPNVGKSTLLNQLLEQKISITSRKPQTTRYQILGVKTFKDIQVIYVDTPGLAGTERTINRYMNRTARGALRDVDAIVFVIEPHWESQDAWVLDNLKEIETPVFLVINKVDKIKNRATPLSAKTGDQVGTLEQAVHQLMPESPFYFPPEQVTDRSDQFMASEIIREKL................................................... 199
10 -23.700IDP02279 gene: era; GTP-binding protein Era [Francisella tularensis subsp. tularensis SCHU S4] FTT1164c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  1....................................................................................................................................................................................................................MKKCGY-ISIIGRPNVGKSTLLNNILKYKVSITSRKPQTTRHQITGIKTLGDTQFIYVDTPGIHKEPKAINKFMNKAATTMFKDVDVILFVVEMGKWTELEDNIVEKLKHEIPIFLVVNKVDKKKSLEAAVSAKQGHNINELESRIEKLLPESEYFFYEEDQITDRSIKFMVAEIIR--EKIMRTIGSEVPYQIAVEIDSYKVDQEKNIVYIYASILVERDSQKGIVIGA 246
11 -23.600IDP00540 gene: era; GTP-binding protein Era YPO2719 [Yersinia pestis CO92]  ali follow..  22  12...........................................................................................................................................................................................................................IAIVGRPNVGKSTLLNELLGQKISITSRKPQTTRHRIMGIHTEGPYQAIYVDTPGLHEEKRAINRLMNRAASSSLGDVELVIFVVEGTHWTADDEMVVNKLRSQCPVLLAINKVDNVTDKTVPISAEKGMNVDTIASIVRKHMPEAEHHFPEDYITDRSQRFMASEIIREKLMRFLGE-ELPYSVTVEIEQFVPNERGGYNIHGLILVER------KKMVIGN 250
12 -18.700IDP06094 gene: engB; ribosome biogenesis GTP-binding protein YsxC [Helicobacter pylori J99] NP_224193 [Helicobacter pylori J99]  ali follow..  23  26..........................................................................................................................................................................................................................EMVILGRSNVGKSTFINTLLGKNLAKSSATPGKTRLA-EDKENALTTTFNVIDLPGFGYAKVSKSLK-LWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQDQAYLSLFTKFDKLNKNEFNALSSKYPTLEIVRQTLLKYLLT.............................................................................. 205
13 -17.800IDP02375 gene: engB; GTPase EngB [Bacillus anthracis str. `Ames Ancestor`] GBAA4701 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  21  25..........................................................................................................................................................................................................................EIALAGRSNVGKSSFINKILNRKKVRISSKPGKTQTL---NFFLINEMMHFVDVPGYGYAKVSKTER-IETYFTTREQLDAAVLVVDLRHKPTNDDVMMYDFLKHYPTIIIATKADKIPKGKVLFSSETGLGKEEAWKAIHKFTKT.............................................................................. 195
14 -17.000IDP04605 ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne] BAS3689 [Bacillus anthracis str. Sterne]  ali follow..  16  7............................................................................................................PGHM-AKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVG----EMELLDTPGILWPKFEDELVGLRLATTGAIKDSIL.............................................................................................................................................. 200
15 -16.600IDP02835 gene: hflX; protease, GTP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0631 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  11.............................................................SKCLLVNINFKYHRELNADLTVIAAEKVVLQSLDFNHPEPDIKYFCGMGKIEM-VVFNHPLTPSQERNIEKFLECRVMDRTRLILEIFSLRAKTYEGKLQVELAQLNYQSTRLVK-PGETQLEIDRRLIRQRIKQIAQKLEKVKHHRDLSRSSRK--TISFVGYTNAGKSTLFNKITNADVLAKDQLFATLDPTLRKVIVPKLGEVIFSDTVGFIKNLPHNLVEAFHATLEEAIESDLLVHVIDYADEDHKSYIEQVEKVADKETICVYNKIDKLENIKVYLSAQNGDGLVEFYQALATFFNK.............................................................................. 370
16 -13.000IDP01790 gene: obgE; GTPase ObgE [Francisella tularensis subsp. tularensis SCHU S4] FTT1731c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  5..............................................................................DEVVIKLKGGNGCVSFRREKYVPRGGPDGGDG--------GGSIYLKADENVNTLIDYRYKREYYAENGRPGEGRNCYGKAGEDLYLVVPVGTSVFDIDTNKKIGEVLQHG-NTHFKSSTNQAPRKFTLGEEGEYLNLLADVALLGLPNAGKSTLIRSVSEA-TPKVADYPFTTMYPHLGVVKVGVDSFVMADIPGVIEGAAEGAGLGLR--LKHLTRARCVLHVVDICPFNESDPVENYFAVEDKPRFLVINKIDLLADKVEQISAAMKKGTDELAKKLNEFLQK.............................................................................. 332
17 -12.100IDP02063 gene: cgtA; GTP-binding protein, GTP1/Obg family [Coxiella burnetii RSA 493] CBU_0387 [Coxiella burnetii RSA 493]  ali follow..  13  5..............................................................................DEAFVRVNGGHGCLSFRREKFIPRGGPDGGDG--------GGSVYFVADKSVNTLVEFRYQRLLRAQNGQPGMGRLRSGKKGEDLIVPVPLGTTVYDKETSELIGDLIEAG-NTHFKSSTNRAPRRTTSGEEGEALKLLADVGLLGLPNAGKSTFIHAVSKATPKIADYPFTTLYPHLGVVRVEEYRSFVIADIPGLIEGASEGAGLGVQ--LKHLERTQLLLHIVDIAPLDGSDPVQSIQAIIQKPRWLVFNKIDLLPPDVYKISAIKRQGTELLCYDLMSFLET.............................................................................. 334
18 -12.000IDP90222 gene: YqeH; GTP-binding protein YqeH, possibly involved in replication initiation BAS4233 [Bacillus anthracis str. Sterne]  ali follow..  15  4.................................................................................TIKCIGCGVEIQT---------EDKNEVGYAPASSLEKEQVICQRCRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN--NKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLKPEDVFLISAAKGEYYRGGKDVYVVGCTNVGKSTFINRMIKENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEI............................................................................................................................................... 245
19 -11.700IDP04532 gene: obgE; GTPase ObgE [Salmonella typhimurium LT2] STM3301_1_390 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  5..............................................................................DEASILVDGGNGCVSFRREKYIPKGGPDGGDG--------GGDVWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHG-NTRFKSSVNRTPRQKTNGTPGDKLMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLIEGAAEGAGLGIR--LKHLERCRVLLHLIDIDPIDGSDPVENARIIIAKPRWLVFNKIDLMDKTEYLISAASQLGVKDLCWDVMTFIIENPIAQAEE...................................................................... 342
20 -11.600IDP01757 gene: obgE; GTPase ObgE [Yersinia pestis CO92] YPO3509 [Yersinia pestis CO92]  ali follow..  13  5..............................................................................DEAAILVDGGNGCVSFRREKYIPNGGPDGGDGGDGGDIYLLADENLNTLIDYRFVKSFRAERGQNGQSRDCTGKRGKTIKVPVGTRVLDQGTGEIVGDMVRHGQRLMVAKG-NSRFKSSVNRAPRQKTMGTEGETLLLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLIPSLGVVRMDYEQSFVIADIPGLIEGASDGAGLGIR--LKHLERCRVLLHLVDLAPIDESDPAENAKVIVEKPRWLVFNKIDLIDPEEYMISAANRDNVNALCWDVMSFLNSQPKAMAIA...................................................................... 342
21 -11.200IDP04204 gene: obgE; GTPase ObgE [Clostridium perfringens ATCC 13124] CPF_2382 [Clostridium perfringens ATCC 13124]  ali follow..  13  4..............................................................................DTAKIFVDGGHGSVSFRREKYVPLGGPDGGDG--------GGDVTFVVDPGMTTLLDFKYKRKFVAGRGQDGQGSKCYGRDGENLTIKVPMGTIIRDVETNKVMADLSHRD-NCKFCTPTRQAPTFAEPGMPGEELKLLADVGLLGFPNVGKSTLLSVVTKAKPKIANYHFTTLKPNLGVVAVPGIEPFVMADVPGIIEGASEGVGLGLD--LRHIERTRLLIHVVDISGVEGRDAVEDFKRINDRPQIVVANKCDMLFDEEFKMSAATSQGVEEVIKEAARMLKD.............................................................................. 332
22 -11.000IDP00679 gene: obgE; GTPase ObgE SACOL1699 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  4..............................................................................DQVKISLDGGNGITAYRREKYVPFGGPAGGDGGKGASVVFEVDEGLRTLLDFRYQRHFKASKGENGQSSNMHGKNAEDLKVPPGTIIKNVETDEVLADLVEDGQRAVVAKG-NSRFATPRNPAPDFSEKGEPGEELKLLADVGLVGFPSVGKSTLLSIVSKAKPKIGAYHFTTIKPNLGVVSTPDQRSFVMADLPGLIEGASDGVGLGHQ--LRHVERTKVIVHMIDMSGSINQELAAYEQRLEDRPQIVVANKMDLPESQDIPVSTITRDNIDQLLYAIADKLEE.............................................................................. 330

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24