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Query: gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILINKSELNKILKKMNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDLINGIKEEIITIQEKDQTLLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFNGSNGKEIFLEASDTYKLSVFEIKQETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESNEINFDFQGNSKYFLITSKSEPELKQILVPSRLast
1 -4.540PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  57..VDVSFSNASSAATKVNSAWKHYK--------LTVTGDDFSWTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESL-----SGKTKTTATSNEVDLDQDVDLSML-----------------------SDTFDQKKFEKDLGAAI-DEFNEGRSGTFEANSSYDEQAGKFTVEKARSNEKLNREHVELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGK--VDGS--SVLQWISFADPANPTLDTSQISSWAAELA--GFNTVGSTRWWTRADGKQCAVEGGDF--------------GWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK...................... 362
2 -2.070PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  10......................................................................................................................................................................................................................................................................GLGIAVCLFSATNSIAQVKTHSSLRAEN--------LEVILVKDIQHISDTTHHTHAHDPHKSSYKILHVNFMLV---SDPSVTGYKSVMMRLIDPHGVDIYDPAAGGGLF....... 110
3 -2.020PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  21...MFEIDNYEEPSETIWGEVVDEATGKRVLT----DQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQN---------TKIFKGEYNVRIDGPFIPLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTV............................................................................................................................................................................................................. 197
4 -1.370PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  1.....................................................................................................................................................................................................................................................................................SVLDGFEAVGEKTTTNKMTMTVMESSVRFSKGVTEA------------CPAYVKLLVNDKQKKIAVQACDAXD.............................. 63
5 -1.240PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  12  210LTITFAYNSTFLNLAQIVRINTIRPNPNP--PNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINK--------SVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEK-------FKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFT........................................................................................................................................................................................................ 375
6 -1.220PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  15  3...........................................RFASHFLFLPAYGYLKQYAVETEEGSVV---------IFPLTEEIENVEWLPGAIVLLTQDELKELD-----NSPLVNAPQNYSKTSAEFYYNSTRILVKFPQNLLMALPPSIEGRCQLLPVYFSNFDITTMLPAAGTRHRL................................................................................................................................................................................................... 132
7 -1.190PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  59...............................................................................................................................................................................................................................YVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTF-----TSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAVVLSGNELTLLFNADKLLKFLSTVSS................................ 179
8 -1.160HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  34......................DNEVAYGFLSYTTFTQEIQGQPEISVNIDSETGAYATFNVKVTNTGK--VPGKTSVQIYGQAPYTEGGLEKVAIQLELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGT---------YYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWN-----------------YYQPGEVTYLTRA------DWAGTFPKTYDQMTLTSEKLISDLNGNYYTIATDDDTSDIKWGENSNLMFYQMFGLDFDDPKWDELLDKMTLEEAYLATYGGPSIPGVESIGTVETYMTENAGNG.................... 351
9 -1.150PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  1................................................................MDIGPCSIPT---------------EFLVGDPLVYLGSKYEKEYFQKIPTGEFREICVVKASDGDCDRYAAVRLKFNDNEISYFEEAMKGIEDLKDINEGDFFGFNVDAGLACIC-DKKLHDLYCEFDEKFVKENPDGNAYDDYFADLFKKSYEDNPKYQRDGGDWINWTIPGTDYHLPIFQSGFGDGAYPVYLAYDKDGNVCQLIVE............................................................................................................ 194
10 -1.110HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  15  57...................................................................................................................................................................................................................................................................................................................................GFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSALMIVNNATEKLSLFELSEQ 113

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.