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Query: gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSFDGKLKAQSILETYKNFDWSKCKLVIIQANDDDSSDSFIKQKLIACNTVGAKSELIKLSNQITQAELIEKIISLNHDVNVTGIILQLPVYPHLDKNSLLEAINPLKDVDGLTTNHLAEIKPCIVEAIITLKELFNLEFNNQKIVVVGLGITGGKPIYEFLKTSGYKVQACDKDTPNTFELIKSADIVFTAIGKSHFFQAKNFKKGVILFDIGVSRNKQNKLCGDINPEGIEKKARWWTKTPGGVGPFTVLAIIKNLWILHEKNKRCLQSSILast
1 -3.270PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  16  37................................................................................................................................................AVVDGQGGGIGKHITARLRQE-------------------PPEVEILALGTNAAATVAMIKAGANEGATGERAIRVEAITGSLAIILADAMLGELTPLP-GVTPEPLPHLIEALVNRVKFFYQEGGDK. 174
2 -2.920PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  16  104.....................................................................................................................................................PSQLTQWPVQIKLAPVNAP-------------YFDGAKLLIAADCTA--FHEKFIKGHVTLI--GCPKLDSEKLTEIIRRNDIQSVTIVRMEVPCCGG---LEMAAKKALQDSGKFIPWQVATI 216
3 -2.590PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  20  1..................................................................................................................................................................................................................MDIGPCSIPTGEFVGDLVYLGSKYEKEYFQKIPTGEFRTEICVV................... 46
4 -2.580PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  13  18..........................................................SVAADAAMSRFETQTSRYGSLTMTAGLILSLLGP-------LVFFADLQITAGMVWVAFLAVAAIFGVLWFVEPLTYF----------ILGSAAMYQAFMIGNISNKLVPAAIVAQSSIGAKAGSKRGDLAVMAIGGAATMHLLSLLIFVGFL--------GTWLVSLVPVEVIEVARLYIMPS---MGAVLVQAIVSM................ 193
5 -2.540HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  13  31....................................................................................................................................................GAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADL--AALGGATALSSIVAPGDPCEAASRVARANGAEVTTSVTGEDVVVEVSVEARVLGVAGPV........................ 139
6 -2.270PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  10  11.............................MFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVL------GIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRKHLVDLEFTPDPIVT--------AWAARLRLEHEDRRMRRLAIAVGLWICAAL................... 228
7 -2.190PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  54...NGEVIESRSRFAFIRMDSGEVDVVFYPTLKSSPLECYNEEQQKQLLDGKSIIADVAMADGRRSKAFVQIDEETKQVMYVPTPIIARNLKVLAEVMHL............................................................................................................................................................................. 150
8 -2.110HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  17  78...............................................................................................................................................NVKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSEL---APGASEIVSVKV-TTGTYVLDPGTYYFAAGNGAHDALNNILVLQGA.................................... 184
9 -2.040PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  11  5ISISGRPGLFEVHTQTRT------GVVATSLVDGKRINANARNQVSLLSEINI----YGLEKEVPLQEVLTMIHTKEEGKQC-------SVKPKSPADELFFDVFQDYDEERVYPSDIKKII....................................................................................................................................................... 112
10 -1.700PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  61........................ECSEVLAGVKPANLISIVNRTRPCRLNNLNFMVLQSRQQSLLLLCYVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIGYPAKDVAAFMGL-----VRLPFTCQRLWKIYGNP.................................................................................................................... 207

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35