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Query: gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKGVFVVIEGVDGAGKTALIEGFKKLYPTKFLNYQLTYTREPGGTLLAEKIRQLLLNETMEPLTEAYLFAAARTEHISKLIKPAIEKEQLVISDRFVFSSFAYQGLSKKIGIDTVKQINHHALRNMMPNFTFILDCNFKEALQRMQKRGNDNLLDEFIKGKNDFDTVRSYYLSLVDKKNCFLINGDNKQEHLEKFIELLTRCLQQPTHYLast
1 -3.160PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  16  43....................................................................................MYGVGYTNVFDTYL-SPQEYKGIEFRISRETMRMTTL......................................................................................... 78
2 -3.010PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  10  63..............................................KVIQKIHEIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVVMI--FFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGINHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELD......................... 208
3 -2.830PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  18  1MNKTVNINLANMLFHIDENAYQKLLRYLEA----VKRSFAGTAGSDEIIADIEA----------------------RIAELFYEKMENERQVITQKEVDAVIAIMGQPEDYQVD................................................................................................ 88
4 -2.820PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  13  102YENQLKDILETIIGVEDVSIVVNVDLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKN----GDKETPVVVQTKKPDI-RGVLVVAQGVDNVQIKKT......................................................................................................... 204
5 -2.790PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  11  71......................................ALKNVAGSLAATEAEKKMKEAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNE----LTLLFNADKLLKLSTVSSISSNTTLKAINKLASEYDGMMLGF...................................... 203
6 -2.780HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  8  28..................................................................IFVYMSMRLQQQKAENRNFIETYTITLTKGFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSALMIVNNATEKLSLFELSEQGGEYRFEKEGEEVKPTGAGIKKLSKE................................ 139
7 -2.730PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  13  1........LIAPDGSGRS----IAYRCGAFQLLAQMALRRELPEGVAPAQ-VRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLY.......................................................................................................... 95
8 -2.330PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  9  110....LQCFVVAPSASGKGIVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKK-----------SYLSVLISGTPSQVQTFIPTAEDG-----------SYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSV... 317
9 -2.290PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  6  97...AMYQAF-----IGNISNKLVPAAIVAQSSIGAKA-------GSKRGDLAAVMAIGGAATMHLLSLLIFVG-IEVARLYIMPSL--GAVLV--QAIVSMRNVRATVVALGLAVVIQLLVVPAFPQLGMFATAVVVISSIIINWVVRDRRGQVTIQSEAAPE............................................... 255
10 -2.090PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  22  150QASG--SSFEDIDMAVHTIWKESPSDEEMRHAGK----VMTELDGTELFTRITERLTDEAMSERLAKAM............................................................................................................................................. 212
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.