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Query: gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QIVIDLIIPSFLASAISVVFSIDKLKQDESGGKTISVDFIGGANINFANVREAQIVLATTVILLALCGLFFGLISIYCASYVSANTSFLLRKKIFAKLMRITTPSHDHYGSSTLLVRLTNDVYLMEVIAFDFLRLIIRAPLLFIGGLVFAVTTNQDMSISLLITFPLILLVIGILNRKSIPLFKENQKSVDKINERVEEDVSGYKVIQSFNLHSFTNNKFKIANEGWKKNSTSSLFINSLNIPFTFFLSSLTIIIALLLVFQLDSSVSVDPLPQDAAIRPNIFAFFQYNFYIVLGFILTSLTMVNFNRSRVALGRIKDILSQPEIKTITNKDQKELLPTLEFRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQKLMKNCSLYQKMKESQKDLGGDFDAVNLast
1 -3.940HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  10  9...........................................................................................................................................................................................................................................................................................................................................................................................................................DELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKL-----DFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDE... 190
2 -3.480PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  14  58...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................SGAKLAEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTV-LDAAAVKLNEQADKSLSKAVRAVVESKAAKRLDDA-AKLDEASKLLADSDGKVADNA.............................. 199
3 -2.810PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  10  7....................................................................................................................................................................................................................................................................................................................................................................................................................EFNELPYPTL-ARFGLTQEMIEDLPLCILKEIGKGGYSPV--PMRVTNENGEVIESRSRFA-----FIRMDSGYPTLKSSPLECYNEEQQKQLLDGKSIIADKAFVQIDEETKQVMYVPTPIIARNLKVLAEVMH--LGTVEVNGMQHGEPLTVAVDGEPVTVGI--DLHNKTGI................... 185
4 -2.790HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  12  7.............................................................................................................................................................................................................................................................................................................................................................................................................DVKLWGESVGSLYWEKESNAALFDYERKFIRSGLDISPIIMPISQYRNTPYRFLENRTDCFKGLPGL-----FADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCY-----VGKRGMGALEFEPSEELTELAKSVFTDRM----AFQVQLRQEGRNILDI-----LKVGT............................. 173
5 -2.470PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  8  3................................................................................................................................................................................................................................................................................................................................................................................KIISISGRPG---------LFEVHTQTRTGVVATSLVDGKRINANARNQVSLL-SEINIY--GLEKEVPLQ--EVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEE------RVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQEEVAVKEETSS................................................................. 147
6 -2.170PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  8  1.............................................................................................................................................................................................................................................................................................................................................................................................................................MKTKFIYVVLMALFLGSQMT---LSAQNEENKERKQRPTPEQMMQMQTNQMVRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLYYNEFSKILSQKQIMKIYQ---QEKSNMNKFRKE...................... 162
7 -2.090PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  5  67........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTGTSYKVTRMAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESKEHSEI......................... 154
8 -2.050PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  9  10.................................................................................................................................................................................................................................................................................................................................................NLINPEDI-------ESQTILKDAAATALYGSRGAVLITTKSGRRGKTHI----FTAEYG--YMDAGQYAQYTWESLKNK--LPEAERYAYRNLAAASGLYHPDDPFDGTFNYKNMTPEQQKMFITNPRIVNWRDAIFK--TGAVQKYDLSLNGGDKTTYYVSFGYLKNDGLVQGSVGALSLNLKLHDRVLLKLS.................................................................. 228
9 -2.050PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  7  4............................................................................................................................................................................................................................................................................QGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDT--DLLPYLSADTQSLQLS-SFDRSGGDF--GTGGCLAPGGAGCVIAEDHGAG------EVDSIWLTRDGRVELDGQTVLDTPVQSLESPGGDYIKVPMPYRRSMRISVEVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGFARSARVSLANTGA................................... 361
10 -1.960PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  9  163.....................................................................................................................................................................................................................................................................................................................................................LGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKARSNEKREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQDPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVEGGD----------------SIDSSSLKQVEDAINNKQTGEIEIKYSQK.................................................... 362
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.