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Query: gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta` (MG_007) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLTTTHALLIIQRKGSFLKPFLDNYLTSIVCENKNGCKKCINCLEILNNKYNSLYWFDQINPFKRENALQLARIFNRERTSVNNKNIYLIEEIEKLSSNSINSLLRLVEDSPINSYGIFTTKNESLILSTFLSRVQKVVLKKASKVPFKVSKNDQEIITSFFTVDEQIEAIENGSFNRFKIILDACLNKKTGTEQIYHAWQIFRDFSNSEIAQLITLIINKTENIDKKSILFNCLKVLPYNPPKSTLFANLVSWLast
1 -6.080sp|Q504Y0|S39AC_HUMAN Zinc transporter ZIP12 OS=Homo sapiens GN=SLC39A12 PE=2 SV=3  ali   10  15..................RSLIKTLLEKTGCPRQGDCNLC-----FEPDALLLIAGGNFEDQLREEVVQRVSLLL-----------LYYIIHQEEICSSKLNMLHSLLSLRQDEDSSFLSQNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANESTLPQLAAMIITLSLQGVCLGQGNLPSPDYFTEIFSSLNRTNTLRLSELDQLLNTLWTR................................. 215
2 -5.840sp|P42858|HD_HUMAN Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=2  ali   22.........................................................................................SEHLTWLIVNHIQDLISLSHEPPVQDFISAVHRNSAAFIQAIQSRCENLS-TPTMLKKTLQCLEGIHLSQSGAVLTLYVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQRHQRLYSLLDRF................. 171
3 -5.840sp|Q6ZRR9|DCDC5_HUMAN Doublecortin domain-containing protein 5 OS=Homo sapiens GN=DCDC5 PE=2 SV=2  ali   29...............IKEENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEK-GLKQLLPGVPFLCI-------TKTQKPFLQGPFKVISVAEVDLSCDKAEKTLLLSLRM................................................................................................................................................ 123
4 -5.830tr|B6ZDN3|B6ZDN3_HUMAN Uncharacterized protein OS=Homo sapiens GN=DCDC5 PE=4 SV=2  ali   33...............IKEENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEK-GLKQLLPGVPFLCI-------TKTQKPFLQGPFKVISVAEVDLSCDKAEKTLLLSLRM................................................................................................................................................ 127
5 -5.670sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2  ali   51.......INLYHHPGCGGTTLAMHVLWDL--KKNFRC-----------------AVLKNKTTDFAEIAEQVINLVTYRAKSHQDYIPVLLLVDDFEEQENVYFLQNAIHS-------LAEKDLRYEKTLVIILNCMR..................................................................................................................... 155
6 -5.670sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3  ali   8..........................KCIECCSE-HCSFCRSCSKAYVNHMMSFHSNRPSKRFCI---------FKKHSENLRGITLVCLNCDFLSDVSGLDNMATHLSQHKTHTCQVVM...................................................................................................................................... 106
7 -5.580tr|B1AMI2|B1AMI2_HUMAN ATP-binding cassette, sub-family A (ABC1), member 1 OS=Homo sapiens GN=ABCA1 PE=4 SV=1  ali   22........................WVQGIICNANNPCGVVGNFNKSIVARLFSDARRLLLYSQKDTSMKDMRKVLRTLQQIKKSSSNLKLQDFLVDNETFSGFLYHNLSLPKSTVDKMLRADILHKVFLQGYQLHLTSLCNGSKSEEM---------IQLGDQEVSELCGLPREKLAAAERVLRSNMDILKPILMDVTCDDIAHGQLTAAVAATGDAKPNMMGRETLLSICASVPKVEFHERHILKHFSFCVC. 256
8 -5.360sp|Q96K78|GP128_HUMAN Probable G-protein coupled receptor 128 OS=Homo sapiens GN=GPR128 PE=1 SV=2  ali   13  1.............RIQRGKSTSSSSTPTEFCRNGGTWGRC-ICTEEWKGLRCTIANFCENSTYM.............................................................................................................................................................................................. 52
9 -5.230sp|Q9NYY8|FAKD2_HUMAN FAST kinase domain-containing protein 2 OS=Homo sapiens GN=FASTKD2 PE=1 SV=1  ali   10  1..................NSLSDVLDAFSKAPTFPSSNYFTAMWTIAKRLSDDQKRFEKRLMFSHPAFNQLCEHMMREAKIMQYKYLLSLHAIVKLGIPQNTILVQTLLRVTQERINECDEICLSVLSTVLEAMEPCKNVHVLRTGFRILVDQQVWKIEDVFTLQVVMKCIGKDAPIALKRKLEMKALRELDRFSVLNSQHMFEVLSLILLDECSKVVLDNIHGCPLRIMINILQSCKDLQYHNLDLFKGLADY 243
10 -4.910sp|O95436|NPT2B_HUMAN Sodium-dependent phosphate transport protein 2B OS=Homo sapiens GN=SLC34A2 PE=1 SV=3  ali   4........................................................................................IVESFHFKNGEDAPDLLKVITKPDKKVISQIAMNDEKAKNKSLVKIW....................................................................................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.