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Query: gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSDEEKRKLYDQFGHEGLNASGFHEAGFNPFDIFNSVFGEGFSFGMDGDSPFDFIFNRSKKRQQQIVVPYNLDIALVIEINFFEMTNGCNKTIKYERKVSCHSCNGFGAEGGESGLDLCKDCNGNGFVIKNQRSIFGTIQSQVLCSTCNGQGKQIKVKCKTCRSNKYTVTNQIKEINIPAGMYSGEALVDESGGNEFKGHYGKLIIQVNVLASKIFKRSDNNVIANVLVDPMVAIVGGVIELPTLEGIKEFNIRPGTKSGEQIVIPNGGIKFSKSFKRKAGDLIIIISYARPCEYTNLELKKLREFIKPNQEVKQYLNTLKNEYKTLast
1 -92.0003lz8_A mol:protein length:329 Putative chaperone DnaJ  ali model follow..  23  18.AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQT----------HEQSYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNL------------------------------------------------------------PVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS----KTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFD............ 315
2 -81.9004j80_A mol:protein length:284 Chaperone protein DnaJ 2  ali model follow..  28  1.MAAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKS------PEAEEKFKEINEAYAVMSDPEKRRIYDTYGTTEAPPPPPPGG-----------YDFSGFDVEDFSEFFQELFGPG-------LFGKGRDLRAELPLTLEEAFHGGERVVEVAG--------------------------------------------------------------------------RRVSVRMPPGVREGSVIRVPGMGGQG-NPPGDLLLVVRMLPHPVFRLEGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVAVPPRTQAGRKMRLKGGGFP----GPAGRGDLYLEVRITIPERLTPEEEALWKKLAEAYYAR............. 272
3 -69.2001nlt_A mol:protein length:248 Mitochondrial protein import protein MAS5  ali model follow..  24  1...........................................................................................................................GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA--VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQADVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKY--GGYGNLIIKFTIKDPENHFTSEENLKK...................... 246
4 -58.3005y88_T mol:protein length:283 Pre-mRNA-splicing factor CWC23  ali model follow..  11  9VINQRLNLYDVLELPTPLDVPQIKRKYRTLALKYHPDKHPDN-----PSIIHKFHLLSTATNILTNADVRPHYDRWLIEFLRKTNDIERNKLIQKLEESES--------------STIPTTTPHPDLLQIQRHGELLRKHFNLPYGDWKHLNTQDQENASQHPYYDCSTLRIV--------------------------------------------LDNFLQSNNKSN-CLSHLRNQVFITLSANEIYDIYFSERNNKDDSIIIYTVFDTPITAQHVFRNWSSGN-------LIPTVKDISPLIPLHYYDFNLETELNDDIARLVS.............................................................. 276
5 -53.8003apq_A mol:protein length:210 DnaJ homolog subfamily C member 10  ali model follow..  21  2.....QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-----PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVDDRMLCRMKGVN---SYPSLFIFRSGMAAVKYNGDRSKESLVA......................................................................................................................................................................................... 195
6 -52.8002q2g_A mol:protein length:180 Heat shock 40 kDa protein, putative (fragment)  ali model follow..  22  10..........................................................................................................................................................................................................LLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQEGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQ-KGDLILEFDICFPKSLTPEQKKLIKEALD.................. 180
7 -51.6003agz_A mol:protein length:190 DnaJ homolog subfamily B member 1  ali model follow..  18  1.........................................................................................................................................................................................SAQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRIPVVFKDVIRPGMRRKVPGEGLPLPKTPEK-RGDLIIEFEVIFPERIPQTSRTVLEQVLPI................. 190
8 -49.1001xbl_A mol:protein length:107 DNAJ  ali model follow..  46  1...AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-----KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG----------DVFGDIFGGGRGR........................................................................................................................................................................................................................................................................ 107
9 -49.1005nro_B mol:protein length:108 Chaperone protein DnaJ  ali model follow..  45  2...AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-----KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG----------DVFGDIFGGGSSH........................................................................................................................................................................................................................................................................ 108
10 -49.0004j7z_A mol:protein length:113 Chaperone protein DnaJ 2  ali model follow..  38  1..AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKS------PEAEEKFKEINEAYAVLSDPEKRRIYDTYGTTEAPPPPPPGG-----------YDFSGFDVEDFSEFFQELFGPGLFGGFGRRSR................................................................................................................................................................................................................................................................. 113
11 -48.6002b26_A mol:protein length:173 SIS1 protein  ali model follow..  15  9............................................................................................................................................................................................................VSLEDLFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQ-RGNLIVKYKVDYPISLNDAQKRAIDEN.................... 172
12 -47.3002ctw_A mol:protein length:109 DnaJ homolog subfamily C member 5  ali model follow..  38  12LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAE-QFGEENVNTYFVSGPSSG............................................................................................................................................................................................................................................................................................. 109
13 -46.1002n04_A mol:protein length:105 DnaJ homolog subfamily C member 5  ali model follow..  40  14LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGE............................................................................................................................................................................................................................................................................................................ 97
14 -45.3002yua_A mol:protein length:99 Williams-Beuren syndrome chromosome region 18 protein  ali model follow..  25  12CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-----AEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSS......................................................................................................................................................................................................................................................................................................... 98
15 -45.1002lgw_A mol:protein length:99 DnaJ homolog subfamily B member 2  ali model follow..  42  2.....ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGL................................................................................................................................................................................................................................................................................................. 92
16 -45.0002ctq_A mol:protein length:112 DnaJ homolog subfamily C member 12  ali model follow..  25  16.SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-----PKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALN--DSVKTSGPSSG............................................................................................................................................................................................................................................................................................ 112
17 -44.9002dmx_A mol:protein length:92 DnaJ homolog subfamily B member 8  ali model follow..  48  5.SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASG............................................................................................................................................................................................................................................................................................................ 88
18 -44.6002ctr_A mol:protein length:88 DnaJ homolog subfamily B member 9  ali model follow..  45  3.SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK------SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQSG............................................................................................................................................................................................................................................................................................................ 84
19 -44.4002cug_A mol:protein length:88 mKIAA0962 protein  ali model follow..  44  12LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK------DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG.................................................................................................................................................................................................................................................................................................................. 88
20 -43.9002qsa_A mol:protein length:109 DnaJ homolog dnj-2  ali model follow..  27  10LYCGLENCYDVLEVNREEDKQKLAKAYRALARKHHPDRVKNKE--EKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYR......................................................................................................................................................................................................................................................................................................... 100
21 -43.9002l6l_A mol:protein length:155 DnaJ homolog subfamily C member 24  ali model follow..  21  6.QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMS-------WNEGDHSFYLSCRCGGK-----------------------------SKDEAEEVSLISCDTCS............................................................................................................................................................................................................................. 140
22 -43.6001wjz_A mol:protein length:94 1700030A21Rik protein  ali model follow..  31  12.QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG.................................................................................................................................................................................................................................................................................................................. 94
23 -43.2002dn9_A mol:protein length:79 DnaJ homolog subfamily A member 3  ali model follow..  46  3.SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-----PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG.................................................................................................................................................................................................................................................................................................................. 79
24 -42.9002ej7_A mol:protein length:82 HCG3 gene  ali model follow..  47  5.SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG.................................................................................................................................................................................................................................................................................................................. 82
25 -42.8004rwu_A mol:protein length:92 Protein SIS1  ali model follow..  38  4.MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPGGPGG...................................................................................................................................................................................................................................................................................................... 89
26 -42.1002ctt_A mol:protein length:104 DnaJ homolog subfamily A member 3  ali model follow..  25  1.....................................................................................................................................GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTK-VQHCHYCGGSGMETINT----GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK--RSGPSSG................................................................................................................................................. 104
27 -42.1002ctp_A mol:protein length:78 DnaJ homolog subfamily B member 12  ali model follow..  47  3.SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG.................................................................................................................................................................................................................................................................................................................. 78
28 -41.8001hdj_A mol:protein length:77 HUMAN HSP40  ali model follow..  52  2....GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK------EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGC............................................................................................................................................................................................................................................................................................................... 77
29 -41.6003ucs_C mol:protein length:74 Curved DNA-binding protein  ali model follow..  44  1.GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK------EPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQH...................................................................................................................................................................................................................................................................................................................... 72
30 -40.6005vso_A mol:protein length:75 Yeast dnaJ protein 1  ali model follow..  48  6.MVKETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSE------EAAEKFKEASAAYEILSDPEKRDIYDQFG........................................................................................................................................................................................................................................................................................................................ 75
31 -39.8002och_A mol:protein length:73 Hypothetical protein dnj-12  ali model follow..  47  5..VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--------GAEQFKQISQAYEVLSDEKKRQIYDQGGEE...................................................................................................................................................................................................................................................................................................................... 73
32 -38.8001gh6_A mol:protein length:114 Large T antigen  ali model follow..  21  3MREESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEE.............................................................................................................................................................................................................................................................................................. 98
33 -38.7002lo1_A mol:protein length:71 DnaJ homolog subfamily A member 1  ali model follow..  50  3..VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE--------GEKFKQISQAYEVLSDAKKRELYDKGGEQ...................................................................................................................................................................................................................................................................................................................... 71
34 -37.2002m6y_A mol:protein length:77 DnaJ homolog subfamily A member 1  ali model follow..  52  6..VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE--------GEKFKQISQAYEVLSDAKKRELYDK.......................................................................................................................................................................................................................................................................................................................... 70
35 -37.1002ys8_A mol:protein length:90 Rab-related GTP-binding protein RabJ  ali model follow..  29  23.IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV------APGSEDAFKAVVNARTALLKNIKSGPSS........................................................................................................................................................................................................................................................................................................................... 89
36 -35.6003i38_A mol:protein length:109 Putative chaperone DnaJ  ali model follow..  20  2.................................................................................................................................................................................................................................................................................NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS----KTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFD............ 101
37 -33.0002pf4_E mol:protein length:174 Small T antigen  ali model follow..  18  8..EESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASS---------------------LNPGVDAIYCKQWPECVKKMSTNCICLLCLLRMK-HENRKLYRKDPLVWVDCYCFDC.............................................................................................................................................................................................................................. 143
38 -32.5001exk_A mol:protein length:79 DNAJ PROTEIN  ali model follow..  31  1......................................................................................................................................................GVTKEIRIPTLEECDVCHGSGAKPGTQ-PQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS........................................................................................................................................................... 79
39 -30.8001faf_A mol:protein length:79 LARGE T ANTIGEN  ali model follow..  17  8..ADKERLLELLKLPRQGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLGGTG...................................................................................................................................................................................................................................................................................................................... 77
40 -30.4001iur_A mol:protein length:88 KIAA0730 protein  ali model follow..  19  5RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRL---EKQAFLDQNADRASRRT................................................................................................................................................................................................................................................................................................................. 81
41 -29.9004mo1_A mol:protein length:178 Antitermination protein Q  ali model follow..  10  11.............................................................................................................GMAAFCGKHELSQNDKQKAINYLMQFAHKVSGKYRGVAKLEGNTKAKVLQVLATFAYADYCRSAATPG--ARCRDCHGTGRAVDIAKTELWGRVVEKECGRCKGVGYSRMPASAAYRAVTMLITQPTWSRTVKPLYDALVVQCHKEESIA.................................................................................................................................. 161
42 -29.7006ekb_A mol:protein length:81 DnaJ/Hsp40 cysteine-rich domain superfamily protein  ali model follow..  20  1...................................................................................................................................................MAANNNPQGTKPNSLVCANCEGEGCV-------ACSQCKGGGVNL--IDHFNGQFKAGALCWLCRGKKEVL---CGDCNGAGFIGGFLSTFDE..................................................................................................................................................... 81
43 -23.2001xao_A mol:protein length:121 Mitochondrial protein import protein MAS5  ali model follow..  29  2......................................................................................................................................................................................................................................................................................FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKY--GGYGNLIIKFTIKFPENTSEENLKKLEEILPPRIVPA............ 103
44 -22.5001n4c_A mol:protein length:182 Auxilin  ali model follow..  18  112VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP--YEQYAKMIFMELNDAWSEFENQGQKPLY............................................................................................................................................................................................................................................................................................................................ 182
45 -20.8003uo2_A mol:protein length:175 J-type co-chaperone JAC1, mitochondrial  ali model follow..  23  2....TSTFYELFPKTFPKDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY............................................................................................................................................................................................................................................................................................................................ 69
46 -20.6002guz_A mol:protein length:71 Mitochondrial import inner membrane translocase subunit TIM14  ali model follow..  20  10.KMNSKEALQILNLTENLTKKKLKEVHRKIMLANHPDKG---------GSPFLATKINEAKDFLEKRGISK.............................................................................................................................................................................................................................................................................................................................. 71
47 -19.1002bx9_A mol:protein length:53 TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-INHIBITORY PROTEIN  ali model follow..  19  1....................................................................................................................................................................................................MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQTLLDFIQKHLNK.............................................................................................................................................. 53
48 -19.0004it5_A mol:protein length:174 Co-chaperone protein HscB homolog  ali model follow..  23  1..SNAMNYFELFGLPIELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEY............................................................................................................................................................................................................................................................................................................................ 73
49 -18.4001fpo_A mol:protein length:171 CHAPERONE PROTEIN HSCB  ali model follow..  25  2......DYFTLFGLPAQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY............................................................................................................................................................................................................................................................................................................................ 70
50 -16.5002guz_B mol:protein length:65 Mitochondrial import inner membrane translocase subunit TIM16  ali model follow..  15  2...TLDESCKILNIEEDLNMDKINNRFNYLFEVNDKEKG---------GSFYLQSKVYRAAERLKWELAQRE............................................................................................................................................................................................................................................................................................................................. 64
51 -16.3003lcz_A mol:protein length:53 Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA  ali model follow..  22  3......................................................................................................................................................................................................IATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTAQGSTL-IKKHIHE.............................................................................................................................................. 53
52 -15.9003uo3_A mol:protein length:181 J-type co-chaperone JAC1, mitochondrial  ali model follow..  23  7.RRFTSTFYELFPKTFTIDQSRLRKEYRQLQAQHHPDM---------QQGSEQSSTLNQAYHTLKDPLRRSQY............................................................................................................................................................................................................................................................................................................................ 77
53 -15.6003bvo_A mol:protein length:207 Co-chaperone protein HscB, mitochondrial precursor  ali model follow..  23  39.PDPTRDYFSLMDCNRRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLY............................................................................................................................................................................................................................................................................................................................ 112
54 -13.7003cyr_A mol:protein length:107 CYTOCHROME C3  ali model follow..  10  1......................................................................................................................................APAVPNKPVEVKGSQKTVMFPHAPHEKVECVTCHHLVDGKESYAKCGSSGCHDDLTAKKGEKSLYYVVLKHTSCLACHSKKDLTGCAKSKCH................................................................................................................................................................... 106
55 -13.3001i77_A mol:protein length:107 CYTOCHROME C3  ali model follow..  12  23............................................................................................................................................................AVHAKVECVTCHHQVDGKESFAKCGSSGCHDDLAGKQGEKSLYYVVLKHTNCIGCHSK-DLTACAKSKCH................................................................................................................................................................... 106
56 -13.2001ofw_A mol:protein length:296 NINE-HEME CYTOCHROME C  ali model follow..  13  220..............................................................................................................................................................KPEILCATCHHR--SPLSLTPPKCGSCHTKEIDKANPGRPNLMAAYHLQCMGCHKGARPRDTDCTTCHKAAPKSAD........................................................................................................................................................... 296
57 -13.1002k3v_A mol:protein length:86 Tetraheme cytochrome c-type  ali model follow..  16  14..................................................................................................................................................................GCENCHADGEPSKDGAYEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHDDGRTAK............................................................................................................................................................ 86
58 -13.0003cao_A mol:protein length:103 CYTOCHROME C3  ali model follow..  15  8.......................................................................................................................................PTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHV-AEDEDSVGTPCSDCHALEQDGDTPGL-----AYHQQCWGCHEKQAKGPVMCGECHVK................................................................................................................................................................. 102
59 -12.9001m1p_A mol:protein length:91 Small tetraheme cytochrome c  ali model follow..  17  11...............................................................................................................................................................ESGGCESCHKDGTPSADGAFAQCQSCHGKLSEMDAVHKP----DGNLVCADCHDMNVGQKPTCESCHDDGRTS............................................................................................................................................................. 85
60 -12.90019hc_A mol:protein length:292 PROTEIN (NINE-HAEM CYTOCHROME C)  ali model follow..  12  220..............................................................................................................................................................KPEILCATCHHR--SPLSLTPPKCGSCHTKEIDAADPGRPNLMAAYHLECMGCHKGARPRDTDCTTCHKA................................................................................................................................................................. 290
61 -12.6002bq4_A mol:protein length:116 BASIC CYTOCHROME C3  ali model follow..  16  22.............................................................................................................................................KVKFSHKAHASLGTDAAA----CQKCHHKWDGKSEIGGCATEGCHADTTSFKATEKDPKFLMTAMSCQGCHKEMKTAKKTCAQCHNQ................................................................................................................................................................. 115
62 -12.6001duw_A mol:protein length:292 NONAHEME CYTOCHROME C  ali model follow..  15  220..............................................................................................................................................................KPETLCATCHHR--SPLSATPPKCGSCHTKEIDPANPNRPNLKAAYHLQCMGCHQGGRPKNTDCTTCHKA................................................................................................................................................................. 290
63 -12.6001aqe_A mol:protein length:111 CYTOCHROME C3  ali model follow..  15  31............................................................................................................................................................ASHMDIACQQCHHTVPDTYTIESCMTEGCHDNIKERTEISSVERTFHTTKDCVGCHRELKRQGPSCNSCHVQ................................................................................................................................................................. 111
64 -12.5002a3m_A mol:protein length:130 COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit  ali model follow..  45............................................................................................................................................................SSHSSYQCADCHHPVDGKENLAKCATAGCHDVFDKKDKSVHSY-KATTVATCMSCHLEAAGSDKDKSKCH................................................................................................................................................................... 129
65 -12.4001gm4_A mol:protein length:107 CYTOCHROME C3  ali model follow..  14  23............................................................................................................................................................APHEKVECVTCHHLVDGKESYAKCGSSGCHDDLTAKKGEKSLYYVVLKHTSCLACHSKKDLTGCAKSKCH................................................................................................................................................................... 106
66 -12.2001gyo_A mol:protein length:109 CYTOCHROME C3, A DIMERIC CLASS III C-TYPE CYTOCHROME  ali model follow..  18  6.........................................................................................................................................KVVITAPEGEDPHPRFGKVEMSHAKSCVSCHHM--FDGCGDFQKCADCHIDRDDRSYERGFYKAWHSEISCRGCHKAMKAKNEQLQGCHEAAQ............................................................................................................................................................... 108
67 -12.2002lli_A mol:protein length:124 Protein AIR2  ali model follow..  18  2..............................................................................................................................................................EAAPKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRH-------PKAIQCSKCDEVGHYRSQQCTLCKSKKHSKER........................................................................................................................................................... 79
68 -12.0001a2i_A mol:protein length:107 CYTOCHROME C3  ali model follow..  11  23............................................................................................................................................................STHKSVKCGDCHHPVNGKEDYRKCGTAGCHDDKSAKGYYHVMHDKNTKFKSCVGCHVE-DLTGCKKSKCH................................................................................................................................................................... 106
69 -11.9002ozy_A mol:protein length:163 Cytochrome c-type protein nrfB  ali model follow..  15  36..................................................................................................................................................HGKHASVINPNNKLPVTCTNCHGQPSPQHREGVSVCMSCH-LPEQLQKAFWPHDVHVTKVACASCHSSDKGRIKICVDCHSDQRTNPNFNPA----VPLLKEQ............................................................................................................................................ 162
70 -11.7002ewi_A mol:protein length:107 Cytochrome c3  ali model follow..  12  23............................................................................................................................................................STHKAVKCGDCHHPVNGKEDYQKCATAGCHDNKSAKGYYHAMHDKGTKFKSCVGCHKKKELTGCKGSKCH................................................................................................................................................................... 106
71 -11.6001z1n_X mol:protein length:560 sixteen heme cytochrome  ali model follow..  14  487..............................................................................................................................................................DALTMCSGCHHN--AKPSLNPPKCASCHSKPFQERTANQPGLKGAFHNQCIGCHQE-NPKATDCQGCHKPK................................................................................................................................................................ 557
72 -11.5002yxc_A mol:protein length:107 Cytochrome c3  ali model follow..  12  23............................................................................................................................................................STMKAVKCGDCHHPVNGKEDYQKCATAGCHDNKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAKGSKCH................................................................................................................................................................... 106
73 -11.4002yyx_A mol:protein length:107 Cytochrome c3  ali model follow..  10  9..............................................................................................................................................LKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDYQKCATAGCHDNKSAKGAYHAMHDKGTKFKSCVGCHLETAGADAKGSKCH................................................................................................................................................................... 106
74 -11.3002y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3  ali model follow..  51  373..SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF--QNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-G........................................................................................................................................................................................................................................................................................................................ 444
75 -11.2002ewk_A mol:protein length:107 Cytochrome c3  ali model follow..  11  23............................................................................................................................................................SVHKAVKCGDCHHPVNGKEDYQKCATAGCHDNKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAGSKCH................................................................................................................................................................... 106

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.