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Query: gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILINKSELNKILKKMNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDLINGIKEEIITIQEKDQTLLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFNGSNGKEIFLEASDTYKLSVFEIKQETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESNEINFDFQGNSKYFLITSKSEPELKQILVPSRLast
1 -52.600PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain  ali follow..  29  1.................................................................................................................................................................................................................................................................TSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAEIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVR 124
2 -43.600PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain  ali follow..  20  1MKLTIERAALLKALGHVQSVVERRNTI-PILSNILLSAEGDRLSFSATDLDMEIIDEGFAQID--VPGQITAPAHTLYEIVRKLPDGSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPVM.................................................................................................................................................................................................................................................................... 120
3 -39.300PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain  ali follow..  12  1......................................................................................................................................NLEQSKLRRLIERTSFAMAQQ-DVRYYLNGMLLEVSRNT-LRAVSTDGHRLALCSMSAPEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQ-------HHIRATTGEFTFTSKLVDGKFPD............................................................................................................................ 116
4 -10.500PF02747.15; PCNA_MOUSE/127-254; Proliferating cell nuclear antigen, C-terminal domain  ali follow..  10  2....................................................................................................................................................................................................................................................................IPEEYSCVIKMPSGEFARICRDLSHIGDA-----VVISCAKNGVKFSASGETSNVDKEEEAVTIEMNEPVHLTFALRYLNFFTKATPSPTVTLSMSADVPLVVEYKIADMGHLYYLAP.. 127
5 -8.260PF04139.13; RAD9B_BOVIN/32-289; Rad9  ali follow..  1................................................................................................................................................FGKAIQALSR------VSDELWLDPSE-KGLALRSVNSCRSAYGCVLFSILNLNCRLGMKSILPIFRCLNSLEKNVEKCKIFTRSDKCKVVIQFFCRHGIKKIHNVCFQGSRPLQVIKNMCANTLVIQPRVLAEAIVLFTSSQEE-----VTLAVTPLKVCIKSSYSEMFVGPDEFDFFQIG-IDTEITFCFKELKGVLTFSEHAPIAIHFDFPGKPMALSIDDMLLEANFIL... 255
6 -7.710PF02144.16; G3QNL8_GORGO/16-257; Repair protein Rad1/Rec1/Rad17  ali follow..  10..............................................................................................................................................RNLSTILKAIHFREHATCFATGIKVTVENAKCVQANAF---AGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEV-----LQITMSPDKPYFRLSTFDYPKDSDLMEAFHCN-QTQVNRYKISLLKPSTKALVSCKVSIRTDNR...................... 233
7 -5.420PF09116.10; DPA5_BPKVM/117-220; gp45 sliding clamp, C terminal  ali follow..  1...........................................................................................................................................................................................................................................................................EFDLKGEDLQRVKKASATLGLSD----ICVRTEAGSTAITLSATDAQGSSKHTFEINVGEADVDTEFKFFFKSERLNIVDQD-----YKVSIHPAGISRFLGLSLEYFI.... 100
8 -4.820PF18444.1; Q6FUH1_CANGA/23-92; RNA recognition motif  ali follow..  17  15........................................................................................................................................................................................................................................................................................DLLNFVSKNTRISIQDANVEGPLLIGYVNTRDDANRLLKWNGARFAGSSLKF................................................ 66
9 -4.810PF14092.6; A5FLQ8_FLAJ1/29-536; Domain of unknown function (DUF4270 topsan)  ali follow..  72............................PVIESAVLS-----IPYFSHVTANNTDGSHTYELD----GPANGKLKLVYESGYQMRSSFPSNGTELPQYYYTSQNSTFDQAKVGTRLNDDLTKPTTTYTAPEMRLNLNSAFFQDKILKA--KIASTDVFQEYFRGLYFKVEKADGMALMDFSKGKITITTTEERTIVINLVNPTSSGGTANLLQDAKSAGYSGAISSSNVNKTGDERLYIKGGQGSAAVI---KLNDFASKLDDIRAKNWKVNEANLIFNIDRVYLYDLTNNVPLADYYADQTTSLTVGDTKGAKYVFGGLINLGDNKRGKTYKIRTEYIRNLIKDKTAKNVNLGLV........................ 446
10 -4.580PF00705.18; PCNA_HUMAN/1-125; Proliferating cell nuclear antigen, N-terminal domain  ali follow..  17........................EALKDLINEACWDISSSGVNLQSMDVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDLRAEDNADTLALVFEAPNYEMKLMDLDV........................................................................................................................................................................................................................................................................ 123

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.