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Query: gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDPNKLRNNYDFFKKKLLERNVNEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQVAKQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNESANLELLKEGRKPVFDFKPLPHRELCEKLNLVAFDKATKISGTRFVAYTDKAAKLLRAITNLMIDLNKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKLENTRYYLSPTLEVQLINLHANEIFNEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKPENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASNEYREVSSCSSCGDFQARRAMIRYKDINNGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTIKLast
1 -29.100PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain  ali follow..  21  1MLDINLFRANPDLIRESQRSRFASVELVDEVIALDMAWRGKQFDLDKIRQELNATSKKIGQEEEAKKLMESTDEIKKRLAAKEVEVQEAKSTLDAKVTTIGNIV......................................................................................................................................................................................................................................................................................................................... 114
2 -13.500PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)  ali follow..  18  2...................................................................................................................................................................................................................TTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG---SLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIG----SDEMWDRAEADLAVALEENNIPDFSPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEF....................... 212
3 -7.040PF13393.6; G2IXI8_PSEUL/10-315; Histidyl-tRNA synthetase  ali follow..  10  4................................................................................................................................................................ILPATARQVESAKAAMLELFRTAGYELVLPPLIEYADALVS-EGDSALDIKTFKLDDRQLGLRADITPQVARIDAHL-LSNRTGVTRLCYAGSVVHARPSGLM-------SSREPLQVGAELYGYAGIEADL--EIIELMLATLRQVGVDKLRLDVGHIAIFRGLAAAAGLA-----AEDTRELFGALQSKDIATRELVAEVAEPYKSAFLALPELYGPRQVLDKARTRLPSLPEVELGLMQLTAIANALDGQVELS 249
4 -6.870PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)  ali follow..  13  1......................................................................................................................................................TIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPRDMQDSFYFTDELLLRTQTSPVQARTMEKYK----GKGPIKIICPGKVFRRDDDDA--------HSHQFMQIEGLYV----DHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTE--SVEVDVSCGKQTGWIEILGAGMVHPRVLEMSGF----NPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTND------RFLAQF....... 250
5 -6.110PF11669.8; H9G3Z2_ANOCA/43-144; WW domain-binding protein 1  ali follow..  13  10.................................................................................................................................................................................................................................................................................................................................GETGCCIYYYELWW-----WTVLFLFGCCCAYRHRRAKLRLQQQQRQREHGACNYPPSMVDLRMLASFKLPAYEEVAHRPTTPPP--PY....... 101
6 -5.880PF02497.15; O55485_PRRSV/1-178; Arterivirus glycoprotein  ali follow..  24...........................................................................................................................................................................................................................................................KPCFSSSLADIKTNTTAAASFAVLQDISCLRHRDSARKIPQCRTAIGTPVYVTITANVTDENYLHSSDLLMLSSCLFYASEMSEKGFKVVFGNVSCVNFTNYVQHVKEFTQRSLVVDHVRLLHFMTPETMRWATVLACLF.......................... 172
7 -5.320PF04043.15; F6HHS0_VITVI/35-188; Plant invertase/pectin methylesterase inhibitor  ali follow..  12  14...........................................................................................................................................................................................................................................................HLCYDIYANKIQTSPKRLATT-RSTLVSMKQLSKTHGLKPREASAMIDCVEEVAD-ELHKSIGEMGHAGGPDFEFRMGNIQTWVSAA-----LTDEETCTDFAGRAMNGNLKKTVQRHINKVARLTSNALAL.................................. 154
8 -5.310PF02942.14; NS1_INBLE/1-247; Influenza B non-structural protein (NS1)  ali follow..  16  5..............................................................................................................................................................................................................................MTTTQIEVGPGATNATINFE------AGILECYERFSWQRALDYPGQDRLHRLSRIKTHNKSEPENKRMSLEERKAIGVKMM-------KVLLFMDPSAGIEGFEPYCVKN-----------PSTSKCPNYD-------WTDYPPTPGKYLDDIEEEPENVDHPIEVVLRDMNNKDARQKIKDEVNTQKEGK... 170
9 -5.270PF01734.22; Q09D74_STIAD/17-214; Patatin-like phospholipase  ali follow..  10......................................................................................................................................................................................................LITLRVLRQLEARFPGFVERAQMFSGTSTGAFVSLYLAHALSLRQRQGVQAPGCLDIIDGCIAFNERMTRQFKVKAINILRLISGLVPMYDGKAIREIL---EETFGEAKLCELEKMVVIEAFDSTVWRKATYHQFPPDADFVTTLVDAALASSAFPVLMPIYRSGNTVGRHKNDLMMDGALSNNSTAMTAL........................... 198
10 -5.260PF02091.15; SYGA_PELCD/3-280; Glycyl-tRNA synthetase alpha subunit  ali follow..  12  11....................................................................................................................................................................................................................YWAKQGCIIQQPYDMEKGAGTFNPATFLRVLGP-NVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVMKP----PTNIQELYLDSLKSFGISPSRHDIRFVEDDWESPTLGAWGL----WEVWLDG-----EITQFTYFQQVGGIDLKPVSAEITYGCERIAMYLQGVDNVYDLEWIDGIK......................... 182

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24