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Query: gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKILINKSELNKILKKMNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDLINGIKEEIITIQEKDQTLLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFNGSNGKEIFLEASDTYKLSVFEIKQETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESNEINFDFQGNSKYFLITSKSEPELKQILVPSRLast
1 -51.500d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  1.................................................................................................................................................................................................................................................................RRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 121
2 -51.200d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  23  1.................................................................................................................................................................................................................................................................KRVIPETFKTKVVVSRKELRESLKRVMVIA-SKGSESVKFEIEENVMRLVSKSPDYGEVVDEVE-VQKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDISGYLYIVMPIR 121
3 -50.300d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  18  2..................................................................................................................................................................................................................................................................RVIPRDNAKILTLDNDLFAKAVDRVATIS-AEKSRSVKLAVEPGRITLTVRNMEAGQAVEEVE-VDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPVDPGVKYVLMPLR 121
4 -47.400d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  1MKVTVTTLELKDKITIASKALAKKSVK-PILAGFLFEVKDGNFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQKMVKVLPDEITELSLEGDALVISSGSTVFRITTMPADEFPEIT................................................................................................................................................................................................................................................................... 119
5 -46.700d4k3la1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  1MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD.................................................................................................................................................................................................................................................................. 121
6 -46.600d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  22  1.................................................................................................................................................................................................................................................................STFIPESSSSKLVINRKMFADSIERIAIIT-VEKFRAVKLSLSRETLEISAVGEARGNAKEVINSEYNSDESLAIGFNPQYLEDVLKAVKSDVVELYFSDVSAPVLIKFPENPKDIFVVMPVK 130
7 -46.400d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  20  2LKLIVETKTLVQSLGFASSVVEKRNVI-PEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQVV--SEGECTVSTKTLNDIVRKLPDSELTLTDGTTGLEIKGKNCKFNLFTLPVSSFPAMDSI................................................................................................................................................................................................................................................................. 122
8 -40.400d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1................................................................................................................................QSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFET-EGEELRTVATDGHRLAVCSMPIGQPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS-------NNIRAHVGDFIFTSKLVDGRFPDY........................................................................................................................... 122
9 -37.700d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  2................................................................................................................................ESGITFEVDTSLLEEMVEKVIFAAAKD-EFMRNLNGVFWELHKNL-LRLVASDGFRLALAEEQIENEEASFLLSLKSMKEVQNVLDNTTEP------TITVRYDGRRVSLSTNDVETVMRVVDAEFPDY........................................................................................................................... 123
10 -36.800d5w7za2 d.131.1.0 (A:123-248) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  18  1................................................................................................................................NPEASFKISCTDFAKIIESTKFSISLD-ETRYNLNGVYLHIKDKE-FCSASTDGHRLSISWVTLEKKNFGVILPQKSAEEILKIVKDPKNI-----EDIEILLSSNKIKFICENTSMLSKLIDGTFPDY........................................................................................................................... 126
11 -36.700d5wcea2 d.131.1.0 (A:119-250) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  10  3.............................................................................................................................SSDGLSSRIAVDTNELIRLIDKTRFAISTE-ETRYYLNGLYVHTVGETKLRAVATDGHRLALAEMPAPEGIPGVIVPRKTIAEARRLMESAGETVDLQVSP-------QKVRFEFGAAALTSKVIDGAFPDY........................................................................................................................... 132
12 -10.900d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  16  1..............................................................................................................................................................................................................................................................PEL------ELPAKIVMDAGEFKKAIAAADKISDQ-----VIFRSDKEGFRIEAKG-DVDSIVFHMTETEFNGGEARSMFSVDYLKEFCKVAGGDLLTIHLGTN-YPVRLVVGGRAKVEYILAP.. 118
13 -10.400d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  11  2....................................................................................................................................................................................................................................................................IPEQSDAIITLSSAEFLKITKDFSALGDD----SITIGCTKNEVTLTTKG-AMCETCMTLSALENVNKDVTASFALKQISEFAKSAPADNVKLSLSGQAPLIMEFKGEACVLKFYLAP.. 125
14 -10.400d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  2....................................................................................................................................................................................................................................................................IEEQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADG-DIGSGSVIIKPFVDMDQPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 126
15 -10.300d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  16  1..............................................................................................................................................................................................................................................................PEL------PFTAKVVVLGEVLKAAVKAASLVSDS-----IKFIARENEFIMKAEGEKLTLEDEGLLDIEVQ-EETKSAYGVSYLSDMVKGLGADEVTIKFGNEMPMQMYYIRDEGRLTFLLAP.. 120
16 -10.200d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  12  1.......................................................................................................................................................................................................................................................................EFPFKAQLLTITFADIIDELSDLGEV-----LNIHSKENKLYFEVIG-DLSTAKVELSTDNASGADVSSSYGMEYVANTTKMRRSDSMELYFGSQIPLKLRFKLPQEGYGFYIAP.. 116
17 -10.200d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  2....................................................................................................................................................................................................................................................................IPEEYSCVVKMPSGEFARICRDLSHIGDA-----VVISCAKDGVKFSASGETSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPSSTVTLSMSADVPLVVEYKIADMGHLYYLAP.. 127
18 -9.990d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  14  1.......................................................................................................................................................................................................................................................................EFDIKATINASGLKNAIGEIAEVADT-----LLISGNEEKVVVKGEGEEFSKDTGSLADIEFN-KESSSAYDVEYLNDIISLTKSDYVKVAFADQKPMQLFNMEGGGKVTYLLAP.. 116
19 -9.800d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  11  1..............................................................................................................................................................................................................................................................PDSIRIPDLDLAANIVLEGTHLDRGIKAADMVSDH-----IRLRVDGAEETFHIEAEDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPDAEVTVELGEE-FPVKLHAEGMGTITYMLAP.. 130
20 -9.280d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  2IDVIMTGELLKTVTRAIVALVSE----------ARIHFLEKGLHSRAVDVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSITKDLVELIVEDSTLKVKFGSVEYKVALIDPSAIRKEPRI................................................................................................................................................................................................................................................................. 122
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.