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Query: gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta` MPN007 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFNPTHALLIIQRRGSYLQPVLTEYLTRVVCEQQTGCQTCPSCLEILHGTYNNFYSFDQANPFKREHALHLSEVLNRQSESNQKQLYLIKNLETLTATAMNSLLRLIEEHPVNTYGVFTTKNENMILPTILSRVQKVVLKKATQLPFQVDSKDQAILKSFFSVDEQLQALDNGSFTRLKTIITTLTNKKNTASTVHEAWVLFKQLNQTETAQVLNFMVDYTKDLTKKDRLLNMVQNLVFNPPKAALFANLINWLast
1 -78.100[L] COG2812 DNA polymerase III, gamma/tau subunits  ali follow..  19  35.EKFSHAYLFSGPRGTGKTSAAKIIAKAINCEQAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYKVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRFDFKRISNDALVGRMKEILTHEGIEAEDEALVLVAEGGMRDSLSLLDQAISFADERVTVEDVLAITGAVSHEVLTQVVESAQK-----GETAEALQLVNQLLANGKDPLRFVEDL.. 285
2 -57.200[L] KOG0991 Replication factor C, subunit RFC2  ali follow..  10  67.GNVPN-IIIAGPPGTGKTTSILCLARALLGP----------------ALKDAMLELNASNDRGIDVVRNKIKMFKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHCVN-----ANIDEAYKILAHLWHLGYSPEDIIGNI.. 299
3 -56.500[L] COG0470 ATPase involved in DNA replication  ali follow..  12  44.GKLPH-LLFYGPPGTGKTSTIVALAREIYGK----------------NYSNMVLELNASDDRGIDVVRNQIKDFASTIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALSNGDMRRVLNVLQSCKATLDDEISDDVIYECCGAPRPSDLKAVLKSILE-----DDWGTAHYTLNKVRAKGLALIDLIEGI.. 281
4 -54.400[DL] KOG2035 Replication factor C, subunit RFC3  ali follow..  10  34.ADCMPHLLFCGPSGAGKKTRIKCLLRELYGVGTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVDLVKEMAQTSQIESTQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKISEGNLRRAILMTEALRMENESGVAESVVIPVPE---EIYIQETARLILQKQSS-DMLLKVRERLYELLSRCIPPTVIFKKL.. 298
5 -53.800[L] KOG0990 Replication factor C, subunit RFC5  ali follow..  13  70.NKLPHLLLY-GPPGTGKTSTILAVARKLYGP----------------KYRNMILELNASDDRGIDVVRQFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALSNGDMRKALNILQSTHMASKKQITEEDVYLCTGNPLPKDIEQISHWLLN-----KPFDECYKDVSEIKTRGLAIVDIVKEI.. 312
6 -43.800[L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  11  52.....HSMILWGPPGTGKTTLAEVAANYANAE----------------------VERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTAAVFADNVLDRLVNGDARMSLNYLELLYDMAREDDQGRKQIDLKGDIWYDLISAVHKSIRG-----SDPDAALYWAARMISAGCDPLYIARRL.. 296
7 -40.800[K] KOG2680 DNA helicase TIP49, TBP-interacting protein  ali follow..  10  182.EKVQSGDVIAIDKATGKTKLGRSFSRSRDYDAMVQCPEGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMSPILVVATNKSPHGIPIDLLDRLLIITTQPYTDDDIRKILEIRCQEEDVEMNEEAKQLLTDTSLRYAIHLITAAALSCQKRKG--------KVVEVEDIQRVYRLFLDVRRSMQQSQYMFSEPIKNDEAAAEDEQDAMQI.. 469
8 -40.500[L] KOG2028 ATPase related to the helicase subunit of the Holliday junction resolvase  ali follow..  8  135.NRLPSIVFW-GPPGTGKTSIAKSLINSSKDPSLYRFVSL------------------SAVTSGVKDVRDAVESAKRLNLEGRKRVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSEVEVDDSVIEFLCDGDARVALNALEISATMATTRAGTDAVVSIDDAKEALQCKHLANLISALHKSMGDANAAIYWLARMLEGGEEPLYIARRL.. 386
9 -36.900[L] COG2255 Holliday junction resolvasome, helicase subunit  ali follow..  8  52.GDALDHVLIFGPPGLGKTTLANIIANEMGVNLRTTSGPVLEK---AGDLAAMLTNLEPHDVLFIDEIHRLSPVVE----EILYPAMEDYQLDIMIGEGPAARSIKLDLPP--FTLIGATTRAGSLTSPLRDRFGIQRLEFYQVADLEHIVSRSAKCLGLELTPEGAHQLARGTPRITNRLLRRVRDFAEVRAD........................................................... 239
10 -34.600[L] KOG1942 DNA helicase, TBP-interacting protein  ali follow..  7  217..DLEAEEYVPLPKGEVHKKKEIVQDVTLQDANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKV--VNRYIDEGVAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGPHGVPIDLLDRLVIIRTQIYDPSEMIQIIAIRAQVEELTVDEECLVLLGRTSLRHAVQLLSPASIVGRDNICKADIEEVTSLYDAKSSAKLLHEQQE.................................. 454
11 -16.700[L] COG1466 DNA polymerase III, delta subunit  ali follow..  10  19YAEKVPAIALIGSALEDDKDALIELLVSE-----------------------SFKELGGQGL----MPATLMSWTETFALFQEHETLGIIHAEKFPLATKEFLSRYARNPQPHLTILIFTTKQEKALPSALSLSLFGEWPADRQKRIIRLLLQRAERVGISCSQSLASLFASTSLPDILSEFDKLLCSKKTSLDHSDIKELVVKKEKASLWKFRDSLLK-----RDPVEGHQQLHFLLEDGEDPLGIITFLR. 250
12 -15.400[L] KOG1968 Replication factor C, subunit RFC1 (large subunit)  ali follow..  7  410.....KAVLLSGPPGIGKTTAAHLVAKLE-----------------------DVLELNASDTRSKRLLDELFGVTDSQSLAGSRLVLIMDEIDGMSSGDRGGVIKKSMIP----IICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINSTYKLSCSEMTPQNSQAVIKNSEKHIVMKPWDICSRYLHG.............................. 624
13 -15.100[S] COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain  ali follow..  7  34ISQVGKHLLIEGPSGIGKTCVVFKVFEELQWSQGR-----------------DFTYVGCRDQNAEQIIDDFLKNAAAGNALSP-CVLVIDDFHLLSQAKRMEILKRLQAEPAKVILIGIPTAGVSLLYDLGPRLGSYALTRASDVEIDKLISEGEQALAVLFEDDVLLAESAGNFWLAQYVCNKVCAIEE-TFDILGIRGRLMAELTQRYLPIARTFAKGKRWRPGGNKPYLEILLALCKIQDSVVTFDQL.. 289
14 -14.400[H] COG1239 Mg-chelatase subunit ChlI  ali follow..  10  76....RQNFILLGLRGQAKSRILRAITELLPDDPLNPIGAEGQHLLEAHGMEPDVTVADLIGDVDPIKAARLGTSLG---PRANRGIFAVNELADLSPKVQVALFNILQEGDVQIVMLVFSANPEKIVTPLKDR--RTHYPTDVQLGMDITAQEAVKEEGVVVPPFIAELIED-SQRLPISLMELACANAERRSLVSGDAPVVRVTDVYAGLPAITGKMELEYE-GELKGADNVAKDLIRK............. 382
15 -14.100[LO] COG1474 Cdc6-related protein, AAA superfamily ATPase  ali follow..  9  62.GETPSNVLIYGKTGTGKTAVTRYVGKELERVSEDNCEVIDTQYRLLANLARHFEEEVPMTGWPTDQV--FMKFKEAIDARDQVIIIILDEIDKLIKKGDDVLYNLSTDLRKAKVSMIGVSNDLKFTEFLDPRVKELIFPPYDAEQISDILKQRAAYNDGVLGEMVIPLCAAGDARRALDLLEIAERENQPQVLEEHVRRAQEKIEIDRVVEVVRTLPTQSK............................... 311
16 -13.800[DL] KOG1970 Checkpoint RAD17-RFC complex, RAD17/RAD24 component  ali follow..  10  130....GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATLRTDKKIILVEDLPNQSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLLCSISNISFNPVAPTIMMKFLNRIVTIEANKNGGELLCQGCSGDIRSAINSLQFSSSKGEN.............................................................. 349
17 -13.500[R] COG2607 Predicted ATPase (AAA+ superfamily)  ali follow..  9  80.GRPANNVLMSGARGTGKSSLVKALLHEY------------------ADKGLRLIEVDK------SDLIGLPYLLTLLKECPEKFIVFCDDLSFESGDETYKALKTLSQRCANVLVYATSNRRHLMVEEKISLSDRFGFYPFDQNDYLAAVQNWLEDFGVPYDETAQMAALQ-SGRSAWQFACDWAGRLPKQRAL.......................................................... 287
18 -12.500[F] COG1618 Predicted nucleotide kinase  ali follow..  8  7.EKTMLRIAVTGSPGVGKSTVVAKTAEKLAEKPGFKIGGIRTAEIRKEGHREGFSIRDLATGKTGILSHVKGSGANAVRNALACDLVVIDEIELISQSFVSAVEEVLESDKP-VLAVLHHSSRHPLAQRFRKGFEVLTVDKGNRDELPEKITNRFLR................................................................................................ 181
19 -12.400[O] COG1219 ATP-dependent protease Clp, ATPase subunit  ali follow..  10  116.......ILMIGPTGSGKTLLAETLARLLN-------------VPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSQQALLKLIEGTVASVILFICGGAFAGLERVIQNRSAR---GGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPVIATLDE--LDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALE............. 364
20 -12.100[R] KOG2170 ATPase of the AAA+ superfamily  ali follow..  9  105......VLSFHGYTGSGKNYVAEIIANNTFRLGLR-----------STFVQHIVATNDFPDKNKLEEYQELRNRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDY--RRSIFILLSNKGGG---EIARITKEQYESGYPREQLRLEAFERELMNFSYNEKGGLQMSE-----ISNHLIDHFV---------------FLPLQREHVRSCVGAYLRKRGRGDNVDFVERVLNSLQYFPESSKAFSS.... 326
21 -11.700[R] COG0714 MoxR-like ATPases  ali follow..  11  34....GHA-LLEDVPGVGKTLLAKSLARSINGKFQR---------------TPDLLPTD----TGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVMEELVPHPFFVIATQNPIEYQGTF-AQLDRFALSLSLGYPSEAEELKMLQRQQNPEAIAVGDLESCISLEEVEALQKAVRQVKLTEDLQQYLLRLVRASRTDEDVTL........................................ 239
22 -11.600[G] COG3265 Gluconate kinase  ali follow..  8  3....GKCIIVMGVSGTGKSCVGQALALALGAKDGDDLHPRANIQKMAAGQPLNFLVCSALKKQYRDRLREGNEGIRFLWLTGDYDLVL-RAGHFMPESLLKSQFATLEAPEPDVIPIDISSSIADVVEHCIAALSL..................................................................................................................... 168
23 -11.600[LD] KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase  ali follow..  9  146.QQKAGSLYICGCPGTGKSLSMEKVVQQVGDWSTQA-----NCTSLSKTTDIGEIKPGKNANTNSSPLQHLQNLFSQKQESSSSRLIIADEMDYLITKDRGVLYDLFMLTPFSRCILIGVANAIDLADRFLPKLMVITFRAYSKDQILRILQELRVLSYVAFQPKALELCASGDMRKALCVCRSALEILEIEVRMDHMAAALSKTFKSPVVETIQSLPQHQQ-------IICAAAKAFRGSKKDATVGELNK. 436
24 -11.500[R] COG1223 Predicted ATPase (AAA+ superfamily)  ali follow..  9  132.KWAPKNVLFYGPPGTGKT----MMAKALSNEAKTP--------SVKSTKLIGEHV-----GDGARRVHELYERARQLA------IVFLDEFDAIVSEIVNALLTELDNSNEGICTIAATNRVELLDASIRSRFEEEIEFRLPSYEERLEILRRNLEEFPVPVKARLELVAAASEGFSGRDLVEKVIKASLHKAIAEGKDKI------ETEDLLTAAEKVKMPSRQPPKQMFV.................... 352
25 -11.300[G] KOG3354 Gluconate kinase  ali follow..  8  14....KYVFVVIGPAGSGKTTMAKAVSEKLGFEEGDDLHPKANIEKMSQGHPLN-------DNDRWGWLHNCGGACAMELDKESIKGVVL-TCSALKRSYRDILRSSLEHRPAILRFIYLAASRETLIKRTTSRKNHYMKADMVESQLAI........................................................................................................ 152
26 -11.300[T] COG2766 Putative Ser protein kinase  ali follow..  12  103....KQILYLLGPVGGGKSSLAERLKSLM-SPVNDH-IMSPWAAKRLHEFGGDITKFDISALVGKVDIRKLEHHAQNDPCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGGIILAHSNESKNNEAFLDRVYIVKVPYCEEIKIYEKLLNHSELAHAPCAPGTLETLSR................................................................................. 366
27 -11.200[U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase)  ali follow..  13  39LGDGGGFAMLTGEVGTGKTTVARAILASLKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHAQGIQVLLMIDEAQHLAPDVLEQLLTNLETESHKLLKVLLIGQPEQLAQRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWITHGIPRLINLVCDAAL................................................................... 242
28 -11.100[O] KOG0743 AAA+-type ATPase  ali follow..  7  747.....RGYLLYGPPGTGKSSLIAAMANYLK----------------------DVFDLELSSIYENAQLKSILLSTT------NRSILVIEDIDCSGRVTLSGLLNFVD---DERIIVFTTNHKERLDPALLSYCTGLGFRTLVSNYLGLGGLNHPLCEEIE------ALIDSTEVTPA-ELAEELMQEDDTDVVLRGVVSFVENRKVEI............................................ 951
29 -11.000[R] COG2842 Uncharacterized ATPase, putative transposase  ali follow..  12  95........TVYGMSGVGKTKAIQEFAK--------------------SHANVWLVTASPSRSSLSEILYEIALELGISDAKGTEGLLIVDEADHLPYEALEELRIMQEEAGIGLVLVGNDKVYTRMYARLWSRVKNTSIQKTKKADT----QAVAQAWGLETDEEALKVMTGGGLRILTQTYACRNGSKR............................................................... 282
30 -11.000[O] KOG2004 Mitochondrial ATP-dependent protease PIM1/LON  ali follow..  10  508.......LCFHGPPGVGKTSIAKSIATALN----------REYFRFSVGGMTDVAEIKGHRRTYVGAM-KMIQCMKKVKTEN--PLVLIDEVDKIGGAGFHALLELL-DPEQNVLFICTANEISKIPGPLRDRMEMIDVSGYLAEEKVEIAHQHLIPQLRKDTS-----LATEQLKIEDSALEELIKHYCRESGVRNLQQHIERIFRKAALQIAE...................................... 719
31 -10.900[L] KOG1514 Origin recognition complex, subunit 1, and related proteins  ali follow..  13  418.QCLGRCMYIHGVPGTGKTISVLSVMKNLKAEVEAG-----NGLKLASPENIYSVIYEGLSGHRVG--ERFAEGKKIGKENEKPCILLIDELDVLVTRNQSVLYNILDWPPNSKLVVLGIANPEKLLPRISSRMQRLCFGPYNHRQLQ-EIISTRLEGINAFEKTAIEFASSGDARRALEICRRAAEVADYRVIMADVEVAIQEMFQAPHIQVMKSV-----SKLSRIFLTAMVHELYKTGMAETSFDRVAT. 700
32 -10.900[O] COG1222 ATP-dependent 26S proteasome regulatory subunit  ali follow..  10  180..KPPKGVLMYGPPGTGKTLMARACASKTNAT---------------------FLKLAGPQLVQMDGARLVRDAFALAKERKP--IIFIDEIDAIGAKRSDSLLNQLDSSSEEVKIIAATNRVDILDPALLGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARST-AQCKAVCVEALRKEKTEISQNDFMDGIQEVLSRKKSKLL....................................... 398
33 -10.800[O] COG0466 ATP-dependent Lon protease, bacterial type  ali follow..  10  354.......LLLTGPPGTGKTSLGKSIADALG----------REYVRISLGGVRDEAEIRGHRRTYIGAL-RIIQGMRKAGTKN--PVFILDEVDKLSTDPASALLEVL-DPEQNVFFIATANSLASIPWPLLDRMETIEISGYTKNEKLAIAKDHLLPCILEEHG-----LDADKLKIEDEALKGIIDKYTREAGVRGLKKQLARTARFVSEKIVS...................................... 564
34 -10.400[O] KOG0728 26S proteasome regulatory complex, ATPase RPT6  ali follow..  11  180..AQPKGVLLYGPPGTGKTLLARAVAHHTECT---------------------FIRVSGSELVQKEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSSRIESLLNQLDEATKNIKVIMATNRIDILDPALL-RPGRIDRKPPPNEEARLDILKIHSRKMNLTRGINLRKIAELM-AEVKGVCTEALRERRVHVTQEDFEMAVAKVMQKDSEKNM....................................... 398
35 -10.200[O] KOG0741 AAA+-type ATPase  ali follow..  14  251..IHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKL----------FADAEEEQRRLGANSGLHIIIFDEIDAIHDTVVNQLLSKIDEQLNNILVIGMTNRPDLIDEALLGRLQILRMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESL....................................................... 473
36 -10.100[O] KOG0651 26S proteasome regulatory complex, ATPase RPT4  ali follow..  9  182..TPPKGCLLFGPPGTGKTLLARAVASQLDCN---------------------FLKVVSSAIVDKESARMIREMFNYARDHQP--IVFMDEIDAIGGRRFSELLNQLDDSLGKVKVIMATNRPDTLDPALLGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLS-ADLRNVCTEAIRAEREFVIDEDFMKAVRKVGDAKRLET........................................ 399
37 -10.000[O] KOG0727 26S proteasome regulatory complex, ATPase RPT3  ali follow..  10  187..DPPRGVLLYGPPGTGKTMLAKAVANHTTAA---------------------FIRVVGSEFVQKEGPRMVRDVFRLAKENAP-AIIFIDEVDAIATARFDALLNQMDDQTVNVKVIMATNRADTLDPALL-RPGRLDRKPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRP-AEIAAICQEAVRKNRYVILPKDFEKGYRANVKKPDTDF........................................ 404
38 -10.000[R] COG5271 AAA ATPase containing von Willebrand factor type A (vWA) domain  ali follow..  6  890CSTRMFPILIQGPTSSGKTSMIEYVAKKTG----------HKFVRINNHEHTDLQEY--GTYVTDDNGSLSFREGVLVEALRNGYWIVLDELNLAPTDVLEALNRLLDD-PHPEFMLFATQNPKHLSRAFRNRFLEIHFDDIP--------------------ENELETILHKRCKIAPSYAAKIVQFRELSLRRQTTRIFEQKNSFATLRDLFRWAFREAVGYQQLENGYMLLAERARDQKDKLAVQEVIE. 1132
39 -9.750[O] KOG0733 Nuclear AAA ATPase (VCP subfamily)  ali follow..  8  206..HPPRGVLLHGPPGCGKTMLANALANELGV---------------------PFISISAPSSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKIVAQFLTCMDTDGKPVLVIGATNRPDSLDSALRGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAK................................................................................. 375
40 -9.630[O] KOG0730 AAA+-type ATPase  ali follow..  10  272..KPPKGILLYGPPGSGKTLIARAVANETGA---------------------FFFCINGPESKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIERRIVSQLLTLMDKSRAHVIVMGATNRPNSIDPALRGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDT-ADLAALCTEAA................................................................... 455
41 -9.630[S] COG4688 Uncharacterized protein conserved in bacteria  ali follow..  13  545..............................CEHDSPCGDCETCKECIKGLEHSLEILKVREAQITEQFNKAKEHHKIGVFGADRWI----SNLGWRLTHIKTKIKFLENPNGSLLRMPDEYDPSPIKLALLERGMDLDIQKKETAKLDDDLYRLMEL................................................................................................ 678
42 -9.570[L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member  ali follow..  9  55.GGRSQLFRLFGYAGTGKTTLARHFAENVDGEVVFAAFTGKAAQVLRSKGATNAKTIHSLIYRPRGEEEVEDEETGKTSIAPMFALIIVDECSMVDEALGKDLMSFGTP-------ILVLGDPGQLPPVSGGGYFTNHEPDFLLTDIHRQARDNPIIQLAMQVRE........................................................................................ 222
43 -9.450[O] KOG0652 26S proteasome regulatory complex, ATPase RPT5  ali follow..  9  203..RPPKGVLLYGPPGTGKTLMARACAAQTNA----------TFLKLAGPQLVQMFIGDGAKL-----VRDAFQLAK----EKAPCIIFIDEIDAIGTKRFDSLLNQLDSSDERIKVIAATNRADILDPALMGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARST-AQLKAVCVEALRRDATEVNHEDFNEGIIQVQAKKKASL........................................ 420
44 -9.400[S] COG3854 Uncharacterized protein conserved in bacteria  ali follow..  16  125......SILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAHPELQHQVMIEAVENHMPEVIVIDEIG--TELEALAARTIAER-----VQLVGTAHGNQIENLI........................................................................................................................... 242
45 -9.350[O] KOG0726 26S proteasome regulatory complex, ATPase RPT2  ali follow..  8  216..KPPKGVILYGPPGTGKTLLAKAVANQTSAT---------------------FLRVVGSELIQKDGPKLVRELFRVAEEHAP--IVFIDEIDAVGTKRYDSLLNQLDDSRGDVKVIMATNRIETLDPALIGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAK-ADIKAICTEALRERRMKVTNEDFKKSKESVLYRKKEGTPEGL.................................... 437
46 -9.310[S] COG4983 Uncharacterized conserved protein  ali follow..  9  496..LPQSAYLFTEETGIGRNWLSSVLVRVLRGYVAAGIDIQEMLDGTFNG------RLSRKLLAVVDEAKAGMQGYGRWSHSEKLKSMINPEMRRINEKHGLEF-----VEWNCCRWLFFSNNWDALPFDASDR-------RFNVVANPTHRQSPDYYERIYS-----QIANPDFISAVRKRLELLDISGFKPGAIPDMNEAKRKALGAMASDLDNLLAAFRDE--ERSDVINYLHVSIAKLPGEKTINKLIE. 727
47 -9.260[O] COG0542 ATPases with chaperone activity, ATP-binding subunit  ali follow..  12  594.NRPIGSFLFLGPTGVGKTELCKTLANFLFDDE-------NAMVRIDMSEFMEKHSVSPPGYVGYEEGGYLTEAVRRRP----YSVILLDEVEKAHHDVFNILLQVLDD--RNTVVIMTSN-GQHFRPEFINRIETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDFIG......................................................................... 802
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.