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Query: gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSKLast
1 -8.890sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2  ali follow..  13  3....................................................................................................................................KCVMSGSQVK-VFGKAVQALSRISDE------FWLDPSK-KGLALRCVNSSRSAYGCVLFSTLHLKCKLGMKSILPIFRCLNSLERNIE----RIFTRSDKCKVVIQFFYRHGIKRTHNICFQESQPL-KNVCTNTLMIQPRLLADAIVLFTSSQEE-----VTLAVTPLNFCLKSSNEESMDLSNAVHS----GMDTEITFCFKELKGILTFSEHAPISIYFDFPGKPLALSIDDMLVEANFIL... 270
2 -8.240sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1  ali follow..  10  1...........................................................................................................................................MFEARLVQGSILKKVLEALKDLINEACWDISS-SGVNLQSMDSSHVSLVQLTLRSRNLAMGVNLTSMSKILKCAGN-EDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDA-----VVISCAKDGVKFSASGESNVDKEEEAVTIEMN-EPVQLTFALRYLNFFTKATPSSTVTLSM-SADVPLVVE-ADMGHLKYYLAP.. 253
3 -7.930sp|Q99638|RAD9A_HUMAN Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1  ali follow..  5  2....................................................................................................................................KCLVTGGNVK-VLGKAVHSLSRIGDE------LYLEPLE-DGLSLRTVNSSRSAYACFLFAPLLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLS---SLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAE-----VTLGIGRGRRVILRSVTEMCLGEEDFQQLQAQ-EGVAITFCLKEFRGLLSFAENLNLSIHFDAPGRPAIFTIKDSLLDGHFVL... 262
4 -6.230sp|Q96IP4|FA46A_HUMAN Protein FAM46A OS=Homo sapiens GN=FAM46A PE=2 SV=2  ali follow..  9  57....................................ESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQ----TVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGK----VELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSEN--PMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGLKYCNLLVRGFRPASDEIKTLQRYMRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNL................ 380
5 -5.830sp|Q96A09|FA46B_HUMAN Protein FAM46B OS=Homo sapiens GN=FAM46B PE=2 SV=2  ali follow..  8  43....................................AFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEASFQTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQ-----KLVKVCTDSDRWSLISLSNKSGK----VELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSST--PMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYA--CLVTLHRVVNESTVCLMNHERRQTLDL................ 368
6 -5.710sp|Q8NEK8|FA46D_HUMAN Protein FAM46D OS=Homo sapiens GN=FAM46D PE=2 SV=1  ali follow..  8  1.....................................MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQ----VVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGK----LELKFVSSLRRQFEFSVDSFQIVLDPMLDFYSDKNA--KLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGLKYCSLLVHGFKPACMSEIKNLERYMCSIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHL................ 324
7 -5.550sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1  ali follow..  9  25..............................................................................................................................................RNLSTILKAIHFREHATCFATGIKVTVENAKCVQANAF---AGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEV-----LQITMSPDKPYFRLSTFDYPKDSDLMEAFHCN-QTQVNRYKISLLKPSTKALVSCKVSIRTDNRGFLSL-EDGQICFVEYYCCP.. 273
8 -5.000sp|Q8IY37|DHX37_HUMAN Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1  ali   11  1................................................................................................................................................................................IGVTEPRRVAAVAMS---------------QRVAKEMNLSQRVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLRYKVVIIDEAHER-SVYTDILIGLLSRI-VTLRAKRNLPLKLLIMSATLRVEDFTQNPRLFAKPPPVIKVESRPVTVHFNKR-LEDYSGECFRKVCKIHRMLPAGGILVFLTGQAEVHALCRRLR 190
9 -4.880sp|Q00577|PURA_HUMAN Transcriptional activator protein Pur-alpha OS=Homo sapiens GN=PURA PE=1 SV=2  ali follow..  10  61..............................LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRG-TQGQTIALPAQEFRDALAKLIDDYGVEEEPAELPEGTSLTVDNKR-FDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMK............................................................................................................................................................... 279
10 -4.770sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1  ali   11  1..................................................................TGRVL-------NGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITTGTY-TIHAQKEHLYFETVTIKIAPNT-PQLADIVATGFSVCGRISIIRFPDTVKQMNKYKVVLSSQDKDKSLVTVETDAHGSFCFKAKPGTYK-VQVMVPEAETRAGLTLKPQTFPLTVTDRPVMDVAFVQFLASVSGKVSCLDT--CGDLLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLRCSLSHAITLEFYQDGNGRENVGIYNLSKGVNRFCLSKP.. 300
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.