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Query: gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTLKDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNIDILast
1 -3.120PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  45...........................................................................................................................................................................................................................................................................................................................................................................................................EGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGNGLDCYKV-GPTLGGGTTALMAG---------DTIVYPYCYATQEILDNGPLRFTVKLVYNPLVVKGDSTIIETRIITLDA-----GSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMTYVDPTDNAGGDNGKIFVGAAFPTLVKEAKAPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKAIKDSAAWNAYMADFAQKVR. 287
2 -3.070HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  19  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQTNY-KQNQEKAWQVIKNTNIIQIWEDAGAKIN----VGSLRTGLLMKHRDIDFH-IYSSPLNLTDSFQAMARLAEN-------PSIKRIECANLLHTAEACIEWHAWYQNEENELWQMDMIDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKEYYQAVIRDGVRDYSGFKE........... 188
3 -2.890PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  5.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGETGSLYLCTTAFLPLGLPASDDFWSQPDA................................................................................... 118
4 -2.520PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  42.AAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEHGAGEVDSI---DGQTVLDTPVQSLVDGQLGAPFVWPLVESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRF------------------------------------------------------AAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRI-EFDG-------RTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMP-FARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEG-DPLNGQPDQRTATAGCADYCVAVYRIMP------------AEAIGYHSALRFG-GKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL.................................................................................................... 559
5 -2.400PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  12  13....................................................................................................................................................................................................................................................................................................................................................................................................................................................LFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMI-CSVKPKSPADELEAYFFDVFQDYDEERVYPSDIIIQWY........................................................................................................................ 115
6 -2.390PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  5...........................................................................................................................................................................................................................................................................................................................................................................................................................................DSRHSKYVIRIICEGEKTEPLFFTSLCDKLLD----DRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAF----------------------EEAEKLIDDKKVNIAFSSRSFEYYL.............................................................................. 149
7 -2.340PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  15  12.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSMEISEENLVTIEKYSLFQHLIDSNGI---DEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYH...................................................................................................................... 76
8 -2.290PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  1..........ASAQAKQTVKVLEYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLYITVALDQPIK---NGKGSDI------------RIL-----GNAFYSANDPKYGDATI------GGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRFEITYYKPTVETGEIKTPYITIDNYIRWTASWTNPDGSKQTAE-AWEENDQITFRGARLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTFDLDWAVDSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGRITN............................................................................................................................................................................................................................................................................................................................................... 298
9 -2.240PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  65.............................................................................................................................................................................................................................................................................................LQRIIKAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPS--------LQCFVVAPS---ASGKGILSYIRL-------LVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEA--------------------PQMPPNRMFLISGNNTGTGILQN------------------IMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEEVKKSYLSVLISGTPSQVEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEK-----LSVIKTHGIHTLQLTDEQKEEI------DTVFSDLFERSSVANGREMYSFVARLAVNLCRI.. 369
10 -2.100HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  11...................................................................................................................................................................................................................................................................................................................................................................................LQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSLNQAIEVFRTEDQDIEHNFEFGRTKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSYKMMFTMKAKNNRLAYLRDLFYS.......................................................................................................................... 182

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.