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Query: gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSKLast
1 -4.830sp|Q04912|RON_HUMAN Macrophage-stimulating protein receptor OS=Homo sapiens GN=MST1R PE=1 SV=2  ali   13  2............................PSANLVPLKPEEHAIKFEYIGLGAVADCV-GINVTV---GGESCQHEFRGDMVVCPLPPSLQLGQDGAPLQVCVDGECHILGRVGPDGVPQSTL.................................................................................................................................................................................................................................................................. 94
2 -4.720sp|Q6ZTY8|CL063_HUMAN Putative uncharacterized protein C12orf63 OS=Homo sapiens GN=C12orf63 PE=2 SV=2  ali   10  10......................KDEITLSMLKSMLLMEAEDRLNCSAGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLLQDSK.................................................................................................................................................................................................................................................................................................... 88
3 -4.220tr|E9PJL5|E9PJL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf63 PE=4 SV=1  ali   11  6......................KDEITLSMLKSMLLMEAEDRLNCSAGELEIVVEARLQLAAVALQRHRAAYSAAIVFSTLTLL........................................................................................................................................................................................................................................................................................................ 80
4 -3.940tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1  ali   11  6.....................................................................................................................................................................................................................................................................................................................................EGEDAMTGDTDKYLPQDLKELGDDSLPAEGYMGFS.................... 41
5 -3.800sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2  ali   4....................................................................................PCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPSEIAQPGRPRQILAFELRMNIIADATIDLLFTKNRE------TNAVHVNVGAGSYLEITVEENGYTPAIKGQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQLEVYKATYHFIFAQKNFFTDLIQDSPPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWITKQQENVYLAACGETLNIDFSLPFTDFVPATCNTK-FSLRGEDVDLHLF............................................. 270
6 -3.760sp|Q8NEB7|ACRBP_HUMAN Acrosin-binding protein OS=Homo sapiens GN=ACRBP PE=2 SV=1  ali   11  6................................................................................................................................................................................................................................................................................................................LLASQSLSIGNQVGSPESGRFYGLDLYGGLHMDFWCARLATKGCEDVRVSG......................... 56
7 -3.750sp|Q6NUS6|TECT3_HUMAN Tectonic-3 OS=Homo sapiens GN=TCTN3 PE=2 SV=2  ali   10  1.......QTLHGRPRPEYVAIFGNADPAQKGGWTRILNRHCSISAINCTSCCLIPVSLEIQVLWAYVGLLSNPQAHVSGVRFLYQCQSIQDSQQVTEVSLTTLVNFVDITQWPFDFFP...................................................................................................................................................................................................................................................................... 125
8 -3.720tr|B4DR81|B4DR81_HUMAN Uncharacterized protein OS=Homo sapiens GN=TCTN3 PE=2 SV=1  ali   10  26.................................TRILNRHCSISAINCTSCCLIPVSLEIQVLWAYVGLLSNPQAHVSGVRFLYQCQSIQDSQQVTEVSLTTLVNFVDITQWPFDFFP...................................................................................................................................................................................................................................................................... 124
9 -3.680sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   10  9............................................................................................................................................................................................................LMEKLSVMLSTRTNHIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKTKKGTDVMVRCLKLL................................................................................................. 87
10 -3.610tr|F8VZC6|F8VZC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=PMEL PE=4 SV=1  ali   14  40...............................GQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQVIWVNNTIINGSQVWGGQPVYPQETDDACIFPDGGPCPSGSWSQKRSFVYV.................................................................................................................................................................................................................................................................... 128

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.