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Query: gi|13507742|ref|NP_109691.1| DNA gyrase subunit B MPN003 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTLKDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNIDILast
1 -6.730sp|Q6IEE8|SN12L_HUMAN Schlafen family member 12-like OS=Homo sapiens GN=SLFN12L PE=2 SV=3  ali   19  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................MQLSEGLAAHGTRRAGKWKRTQ--VPLLGEECADMDLARFVLFFGNGLAAGKMNISIDLDTNYAELVLNVGRVTL........................................................................................................................................... 73
2 -6.560sp|Q14703|MBTP1_HUMAN Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1  ali   12  10......................................................................................................................................................................................................................................................................................................................................................................................................................................................LYEGETLANHDMYYASGCSIAKFPEDGVVITFKDQGLEVLKQETAVVENVPILGL-----YQIPAEGGGRIVLYGDSNLDDSHRQKDCFWLLDALLQ................................................................................................................... 105
3 -4.780sp|Q8IYR0|CF165_HUMAN UPF0704 protein C6orf165 OS=Homo sapiens GN=C6orf165 PE=2 SV=2  ali   13  4........................................................................................................................................................................................................................................................................................................TQAESVIRSIIREIGQECAAHGEIVSETL----------IAFMVKAVVLDPSNGFNMDRTLMKSDVQNLVKLCMT-----RLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHHRVLESRLGSVTREITDNRACAKEELESLYRKGSPTDIKTVREVTAALQSVFPQAELGTFLTLSKKDKERQLKELTMIVTGIRL------------FNR-----DCGKGGEGIDDL............................................................................................................................. 211
4 -4.060tr|E9PGC6|E9PGC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=PRCC PE=4 SV=1  ali   16  1.........................................................................AFQDDAANAPLEFKMAAGSSGAPWM-----PGDDYSYNQFSTYGDANAAGA--------------------YYQGLQQHLGHSPLRGIMRFLNSKSGKRTCFVPSFDYYS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 87
5 -3.880sp|Q02086|SP2_HUMAN Transcription factor Sp2 OS=Homo sapiens GN=SP2 PE=1 SV=3  ali   13  14...................................................................................................................................................................................................................................................................................................................................................................................................................................................................SPGKNSFGILSSKGNILQIQGSQLSASYPGGQLVFAIQNPTMINKGTRSNANIQYQAV............................................................................................................................................. 71
6 -3.870sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=3  ali   12  1...........................PDFFHGGLYDPKLVHFTQRDYDVLAGRWTSPDYTMWKNVGKEPAPFNLYMFKSNNPLSSELDLKNYVTDVKSWLVMFGFQLSN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 90
7 -3.600sp|Q8IUI8|CRLF3_HUMAN Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2  ali   21  82.................VNGKEMTNQLPAVTSGSTVT-----FDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFD---------------WLLDQSCGSLYFGCSFFYPGWKVL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 160
8 -3.570sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2  ali   23  2...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAARPMRAILPA-GRGSSMGLPRARQAFSLSDKTPSVRTCGLK............................................................................................................................................................ 47
9 -3.560sp|Q9C086|IN80B_HUMAN INO80 complex subunit B OS=Homo sapiens GN=INO80B PE=1 SV=2  ali   15  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................QEEDAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDL............................................................................................................................. 85
10 -3.520sp|Q9H799|CE042_HUMAN Uncharacterized protein C5orf42 OS=Homo sapiens GN=C5orf42 PE=2 SV=3  ali   27  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MADADILSETFQLLIAKDFSKRLWGLVPFG-LYLPAPPLYCPQPAILSEEDGDDLLLKAEKNNRQKVSGILQRV................................................................. 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.