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Query: gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase MPN005 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDRNKLRNNLDFFKKKLVERGVSESQFEAYVQADKAMRKLLHQIELANQKQTLLAQQVAKKKGDPKLLKESKELKQKLEQLNIAFKEAETLSQELLLNLPNIADESVPVGRDETANLELLKEGRKPVFDFTPLPHWELCERLQLVAFDKATKLTGARFVAYTDKAAKLLRAIASLMIDLNKNKYQEWNVPVIVNETSLTGTGQLPKFKDDVFKLENTRYYLSPTLEVQLANLHANEIFTEGELPKYYTATGVNFRQEAGSAGKQTKGTIRLHQFQKVELVKFCKPSEAIHELEEMTRDAEQILLELKIPFRRLLLCSGDMGFSAQKTYDLEVWMAGCNEYREVSSCSSCGDFQARRAMIRYKDLTTGKNTYVATLNGTALAIDRIFAAILEHYQTKAGEVMIPQALLKYLDFDKITKPKLast
1 -6.130tr|E5RG91|E5RG91_HUMAN Uncharacterized protein OS=Homo sapiens GN=VPS37A PE=4 SV=1  ali   16  1...................................................................................................................................................................................................................................................LAPTSTAFPYLYSNPSGMSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTVLSNLPLPIPTVDASPTSQNGFGYKMPDVPDAFP---ELSELRSLYNCEHFESRYIDISIGPKFTFTDSVKNILQTALCSI---VVDVLFDFKVKTGSLRCKNYLEPY.......... 180
2 -4.790sp|Q66K64|DCA15_HUMAN DDB1- and CUL4-associated factor 15 OS=Homo sapiens GN=DCAF15 PE=1 SV=1  ali   12  2..................................................................................................................................................................................................................................................SLPFVVTDLRGRNLRPMRERTAVQGQYLTVEQLTDFEYVI-------NEVIRHDATWGHQFCSFSDYDIVILEVCPTEEGQLRPKTYHTSAWDLNTGIF-ETVSVGDLTEVKGQTSGSVWSSYRKSCVDMVNRMTNEALHKGCSLKVLAD............................ 179
3 -4.790sp|Q96PS1|CC024_HUMAN Uncharacterized protein C3orf24 OS=Homo sapiens GN=C3orf24 PE=2 SV=1  ali   16  2....................................................................................................................................................................................................................................................PIRLSGVDSVFGRVITAQPPKWTGTFRVSDFCKIISREHQWPIGLKEPQIQMVTMCKQMLRSILLLYATYKKCTFALQHSK............................................................................................... 86
4 -4.730sp|A3KN83|SBNO1_HUMAN Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1  ali   13  23...............................................................................................................................................................................................................................TSGHVELYTISVERGMSWEEATKIWAELTG-FYLSLQIRNNKKTAILVKEVNPKKKLFLVYRPNTGKQL-------KLEIYADLKKKYKKVVSDDAL-----------MHWLDQYN-----SSADTCTH-NCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLASVSGTNVKMQIVRLRTE--DGQRIVG.. 199
5 -4.500sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1  ali   10  38....................................................................................................................................................................................................................................................................................................................LARKVLK----SLNPAVYRNVEYEIWLESKQAQQDYSIAAGLQYEVGDKCQVRLDHN------------------GKFLNADVQGVHSENGPVLVEEL.............. 115
6 -4.500sp|Q3KNT9|TMM95_HUMAN Transmembrane protein 95 OS=Homo sapiens GN=TMEM95 PE=2 SV=1  ali   14  6..............................................................................................................................................................................................................................................LPAHDLSGRLARL--CSQMEARQKECGASPDFSAFALDEVSM-------------NKVTEKTHRVLRVMEIKEAVSSLPS--LRKTKLPEYTREA-PPACRGSTTLYNCSTCKGTEV................................................................. 110
7 -4.500sp|Q9Y4F3|LKAP_HUMAN Limkain-b1 OS=Homo sapiens GN=LKAP PE=1 SV=5  ali   13  27........................................................................................................................................................................................................................DPDSYKIPFVILSLKTFAPQSLLQTHEGTVPLLSFPDCYIAEFGD--ENQGGVPLEHFITCVPGVNIATAQNGIKVVKWI............................................................................................................................ 111
8 -4.430sp|P98196|AT11A_HUMAN Probable phospholipid-transporting ATPase IH OS=Homo sapiens GN=ATP11A PE=2 SV=3  ali   10  1..............................................................................................................................................................................................................................................................................................................................................VHGHFYYIRISELVQYFFYKN-QFFCGFSQQTLYDTAYLTLYNISFTSLPILLYSLMEQHVGIDVLKRDPTLYRD........... 84
9 -4.260sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1  ali   113....................................................................................................................................................................................................................................................................DSDPSNLGYELISAFVT--------------------------------VYMLKAVIYNEFHGTEVELGPYYVEIGHEAVSAFMNSSSVHED---EVLVFADSQVNQKSTVVIHHFPSIPSYNVSFISQTQVGDSQAWHSMTVWYKMQS........... 228
10 -4.090sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=2 SV=2  ali   11  6.......................................................................................................................................................................................................................................................................................LFRVPQPDSLDSLIVLILQIEEKLAERLRLPPEARPRNLTWIDSPAPERWMVSSWLPSE.................................................................................. 67

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.