current user: public

If you have questions about the server, please let us know.

Query: gi|13507746|ref|NP_109695.1| DNA polymerase III subunit delta` MPN007 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MFNPTHALLIIQRRGSYLQPVLTEYLTRVVCEQQTGCQTCPSCLEILHGTYNNFYSFDQANPFKREHALHLSEVLNRQSESNQKQLYLIKNLETLTATAMNSLLRLIEEHPVNTYGVFTTKNENMILPTILSRVQKVVLKKATQLPFQVDSKDQAILKSFFSVDEQLQALDNGSFTRLKTIITTLTNKKNTASTVHEAWVLFKQLNQTETAQVLNFMVDYTKDLTKKDRLLNMVQNLVFNPPKAALFANLINWLast
1 -5.890sp|Q6ZRR9|DCDC5_HUMAN Doublecortin domain-containing protein 5 OS=Homo sapiens GN=DCDC5 PE=2 SV=2  ali   29...............IKEENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEK-GLKQLLPGVPFLCI------TKTQKPFLQGPFKVISVAEVDLSCDKAEKTLLLSLRM................................................................................................................................................ 123
2 -5.890tr|B6ZDN3|B6ZDN3_HUMAN Uncharacterized protein OS=Homo sapiens GN=DCDC5 PE=4 SV=2  ali   33...............IKEENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEK-GLKQLLPGVPFLCI------TKTQKPFLQGPFKVISVAEVDLSCDKAEKTLLLSLRM................................................................................................................................................ 127
3 -5.560sp|Q96K78|GP128_HUMAN Probable G-protein coupled receptor 128 OS=Homo sapiens GN=GPR128 PE=1 SV=2  ali   14  1.............RIQRGKSTSSSSTPTEFCRNGGTWGRC-ICTEEWKGLRCTIANFCENS................................................................................................................................................................................................ 49
4 -5.490sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3  ali   11  8..........................KCIECCSE-HCSFCTSCSKAYVNHMMSFHSNRPSK--------RFCIFKKHSENLRGITLVCLNCDFLSDVSGLDNMATHLSQHKTHTCQVVM...................................................................................................................................... 106
5 -5.450sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2  ali   51.......INLYHHPGCGGTTLAMHVLWDL--KKNFRC----------------LKNKTTDFAEIAEQVINLVTYRAKSHQDYIPVLLLVDDVYFLQNAIHSVLAEKDLRYEKTLVIILNCMRSRNPDESAKLADSIALNYQLSS............................................................................................................. 177
6 -5.150sp|Q504Y0|S39AC_HUMAN Zinc transporter ZIP12 OS=Homo sapiens GN=SLC39A12 PE=2 SV=3  ali   15  15..................RSLIKTLLEKTGCPRQGDCNLCEICSSKLNMSNKEYKFYEDSSFLSQNETEDILAFTRQYFDTSQSQCMLQKKSGIVSSEGANMIITLSLQ-PSPDYFTLRLSELDQLLNTLWTR........................................................................................................................ 215
7 -4.670sp|O95170|CDRT1_HUMAN CMT1A duplicated region transcript 1 protein OS=Homo sapiens GN=CDRT1 PE=2 SV=3  ali   15  11.........................APYFRCEKGTDCRKCETRV--------------------AWKIFSTKEWFCRINDISQRR-FLVGILKQLNSLYLLHYFQNILQTTQGKDFIYNRS.................................................................................................................................... 90
8 -4.660sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=2  ali   16  11.........................APYFRCEKGTDCRKCETCV--------------------AWKIFSTKEWFCRINDISQRR-FLVGILKQLNSLYLLHYFQNILQTTQGKDFIYNRS.................................................................................................................................... 90
9 -4.500tr|E9PDQ0|E9PDQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=CNKSR3 PE=4 SV=1  ali   14  1.............................................MSQCACLEEVHLPNIKP---------GEGLGMYIKSTYDGLHVITGTTENVGWQLKNLVKKLRENPTGVVLLL....................................................................................................................................... 64
10 -4.490tr|E7EVS9|E7EVS9_HUMAN Uncharacterized protein OS=Homo sapiens GN=EFCAB5 PE=4 SV=1  ali   19...........................................KSVIQNVLQEFFQNPDFKLGSHCKQLDITDSTEPRLNKMEFTEYISSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFAELFLHCDHGKVGFLDRQRTLALLEL.................................................................................................... 128

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.