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Query: gi|13507747|ref|NP_109696.1| tRNA modification GTPase TrmE MPN008 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDTKQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKKVDDVLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQAQPGEFTQRGYLNGKMSLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEYTDEQRELVTMNQAVVQITQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANLVIYLLDARQPEPDPKIIARLKKLKKDFFLVHNKADLVQQSFQVSISAKQKQIQPLVDLLTQYLHQFYSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILVVHLRAAHEYILQVLGKNTNYDLINEIFKHFCLGKLast
1 -5.080sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Homo sapiens GN=MN1 PE=1 SV=3  ali   17  3.........LPSQHAQFEYPIHRLENRSMHPYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRCAS-SMHNGA------LDNHLSPSAYPGLPGEFT......................................................................................................................................................................................................................................................................................................................................... 102
2 -4.870sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2  ali   14  26..............................................................................................................................................................................................RDSYEKLKDLIHCWAESPKPIFA-----IINLYHHPGCGGTTLAMHVLWDLKAVLKNKTTDFAEIAEQVINLDYIPVLLLEQENVYFLQNAIHSVLAEKDLRYEKTLVIILNCMRSRNPDESAKLADSIALNYQ...................................................................................................................... 174
3 -4.360sp|Q8TCY9|URGCP_HUMAN Up-regulator of cell proliferation OS=Homo sapiens GN=URGCP PE=1 SV=2  ali   11  41...............................................................................................................................................................LQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGSFREDS-FAFVRMDVSSNSKSQLLNAVLSPGHR--LNLGTNAREISDGLVEISWFPVAFLNLRG--------DIGSHWLQFKLLTEISSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVKRIRAIVGNVLRAPCRRVSVEDMAHAARKGLKVDEDCEECQKAKDRMERITRKIKDSDLQGDPWRKAA... 348
4 -4.350sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3  ali   71..............................................................................................................................................................................................SKESDRTFEILEKFALKDVE---------DFNNVAADSSLDSVPRFFRIN.......................................................................................................................................................................................................... 112
5 -4.340sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1 OS=Homo sapiens GN=GVINP1 PE=2 SV=2  ali   13  9.........................................................................................................................................................................................................................VSFVRVGNLSASKSQIMNCLLSKRKGMVE--GGEDEDRFDNCVTFTNL-----DAKEHEQQLSFL-----------KEVSTVIVVLMSASDDNEGNRKIVRNLWQSSRPLICLEATMTNISGQRMRMGIKNRNEAELTEELTTTIRH---------LLELSDTALSLEDCSQIAHQQ------GFLIDEDQRDCKEAKEKAQALMAFLGKMKLSQ.......... 223
6 -4.190sp|Q02086|SP2_HUMAN Transcription factor Sp2 OS=Homo sapiens GN=SP2 PE=1 SV=3  ali   1......................................................................................................................................................................................................EQVETVLIETTADNIIQAGNNLLIVQSPGGGQPAVVQQVQAEQQQVVQIPQQALRVVQAASATLPTVPQKPSQNFQIQAAEPTPTQVYIRTPSGEVQTVLV............................................................................................................................................... 106
7 -4.160tr|C9JMU6|C9JMU6_HUMAN Uncharacterized protein OS=Homo sapiens GN=PPP2R3B PE=4 SV=1  ali   12  11...............................................................................................................................................................................................VNVDAVISKIESTFARFPHERATMDDMGLVACGCPLYWKGPLFYGAGGERTGSVS.................................................................................................................................................................................................... 67
8 -4.110sp|Q9BX69|CARD6_HUMAN Caspase recruitment domain-containing protein 6 OS=Homo sapiens GN=CARD6 PE=1 SV=2  ali   11  8.........................................................................................................................................................................................................................ISFVRLGYCSFSKSRILNTLLSPAQLLHQDLPLLVRQISDGLVEIT-----CFPDSDDRKENPFFQK---TQFGFLMEVSSAVFFFTDCLGEKEWDLLMFLGEAAIERCYFVLSSQALKPAQLLFWERGDAGDRRKNMEGLQAALQEVMFSSCLRCVSVED................................................................ 198
9 -4.110sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5  ali   11  10..............................................................................................................................ILQIMKELNKRGRVLVN-DAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQW-------DLNAWTKSAEAFGKIVAERPG................................................................................................................................................................................................ 125
10 -4.030tr|C9JBQ0|C9JBQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ABTB1 PE=4 SV=1  ali   15  16.............................................................................................GRVRYLLEQVLYLLANGARCEANTFDGERCLYGADPIRRALRDYKHPLLWDLLSDLEAKCEKVSEFVASKPGTCVKVLTIEPPPAD....................................................................................................................................................................................................................................................................... 103

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.