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Query: gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSKLast
1 -96.9004tr6_A mol:protein length:380 DNA polymerase III subunit beta  ali model follow..  21  3MKFTIQKDRLVESVQDVLKAVSSRTTI-PILTGIKIVASDDGVSFTGSDSDISIESFIPKEVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYTIIRSGKAEFNLNGLDADEYPHLP-----QIEEHHAIQIPTDLLKNLIRQTVFAVST-SETRPILTGVNWKV-EQSELLCTATDSHRLALRKAKLDDRSYNVVIPGKSLTELSKILDDNQELVDIVITE-------TQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAEIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVR 378
2 -94.9006amq_A mol:protein length:366 DNA polymerase III subunit beta  ali model follow..  16  1MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMIARVTL-SQPHEAGATTVPARKFFDICRGLPEGAIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD-----DWQSEVEFTLPQATMKRLIEATQFSMAH-QDVRYYLNGMLFET-EGEELRTVATDGHRLAVCSMPIGDPNHSVIVPRKGVIELMRMLDGGDTPLRVQIGS-------NNIRAHVGDFVFTSKLVDGRFPDYRRVLPKNPDKTLEAGCDSLKQAFARAAILS-NEKFRGVRLYVSENQIKITANNPEQEEAEEILD-VTYAGTEMEIGFNVSYVLDVLNALKCENVRILLTDSVSSVQIEDAASQSAAYVVMPMR 365
3 -94.4003pwe_A mol:protein length:366 DNA polymerase III subunit beta  ali model follow..  16  1MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGCSRFSLSTLPAADFPNLD-----DWQSEVEFTLPQATMKRLIEATQFSMAH-QDVRYYLNGMLFET-EGEELRTVATDGHRLAVCSMPIGQPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS-------NNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGSDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEECLD-VTYSGAEMEIGFNVSYVLDVLNALKSENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 365
4 -94.2003f1v_A mol:protein length:366 DNA polymerase III subunit beta  ali model follow..  16  1MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-----DWQSEVEFTLPQATMKRLIEATQFSMAA-AAAAYYLNGMLFET-EGEELRTVATDGHRLAVCSMPIGQPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS-------NNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 365
5 -94.1005x06_A mol:protein length:386 DNA polymerase III subunit beta  ali model follow..  16  15MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-----DWQSEVEFTLPQATMKRLIEATQFSMAH-QDVRYYLNGMLFET-EGEELRTVATDGHRLAVCSMPIGQPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS-------NNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 379
6 -92.2006ap4_A mol:protein length:388 DNA polymerase III subunit beta  ali model follow..  16  1MRLKIAKESLLNVLSHVVGAVERRHTL-NILSNVKIQTNAQALTITGSDLEVELVASTASEGACLEAGETTVPARKLMEICKSLPTAAIDLQIEDQRCILKSGNSRFVLGTLPAEDYPLLTTEN----SQGTQVQVTQRELKRLFEKTAFAMAV-QDVRFYLTGTLLEI-DENQLRAVTTDGHRLALCEILASSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILS-NEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLA-IQYQSAPLEMSFNAQYLLDVLGVLDGDDVNMSMTEANQSVLVQDPAHPDQTYVVMPMR 381
7 -92.2004tr8_A mol:protein length:383 DNA polymerase III subunit beta  ali model follow..  19  11MHFTIQREALLKPLQLVAGVVERRQTL-PVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE-DAAEPGEITVPARKLMDICKSLPNDVIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE-----EGPGSLNFSIAQSKLRRLIDRTSFAMAQ-QDVRYYLNGMLLEV-NGGTLRSVATDGHRLAMCSLDAQQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQ-------HHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILS-NEKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQ-VEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMR 376
8 -91.4002xur_A mol:protein length:373 DNA POLYMERASE III SUBUNIT BETA  ali model follow..  16  2MKFTVEREHLLKPLQQVSGPLGGRPTL-PILGNLLLQVADGTLSLTGTDLEMEMVARVAL-VQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD-----DWQSEVEFTLPQATMKRLIEATQFSMAH-QDVRYYLNCMLFET-EGEELRTVATDGHRLAVCSMPIGQPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS-------NNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILS-NEKFRGVRLYVSENQLKITANNPEQEEAEEILD-VTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR 366
9 -91.0002avt_A mol:protein length:378 DNA polymerase III beta subunit  ali model follow..  18  2IQFSINRTLFIHALNTTKRAISTKNAI-PILSSIKIEVTSTGVTLTGSNGQISIENTIPVSLLITSPGAILLEASFFINIISSLPDISINVKEEQHQVVLTSGKSEITLKGKDVDQYPRLQ-----EVSTENPLILKTKLLKSIIAETAFAASL-QESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNADFMVVLPSKSLREFSAVFTDDIETVEVFFSP-------SQILFRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETVKIHFLSPVRPFTLTPDEEESFIQLITPVR 376
10 -90.2001vpk_A mol:protein length:378 DNA polymerase III, beta subunit  ali model follow..  18  7MKVTVTTLELKDKITIASKALAKKSVK-PILAGFLFEVKDGNFYICATDLETGVKATVNA-AEISGEARFVVPGDVIQKMVKVLPDEITELSLEGDALVISSGSTVFRITTMPADEFPEIT-----PAESGITFEVDTSLLEEMVEKVIFAAAK-DEFMRNLNGVFWEL-HKNLLRLVASDGFRLALAEEQIENEEASFLLSLKSMKEVQNVLDNTTE------PTITVRYDGRRVSLSTNDVETVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIA-SKGSESVKFEIEENVMRLVSKSPDYGEVVDEVE-VQKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDISGYLYIVMPIR 370
11 -90.0002awa_A mol:protein length:390 DNA polymerase III, beta chain  ali model follow..  18  8IHFSINKNLFLQALNTTKRAISSKNAI-PILSTVKIDVTNEGITLIGSNGQISIENFISQKLLITSLGSILLEASFFINVVSSLPDVTLDFKEEQNQIVLTSGKSEITLKGKDSEQYPRIQ-----EISASTPLILETKLLKKIINETAFAAST-QESRPILTGVHFVLSQHKELKTVATDSHRLSQKKLTLEKDDFDVVIPSRSLREFSAVFTDDIETVEIFFAN-------NQILFRSENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVTISFISAVRPFTLVPDTDEDFMQLITPVR 382
12 -88.4004s3i_A mol:protein length:384 DNA polymerase III subunit beta  ali model follow..  17  3MKISVSKNDLENALRYLQAFLDKKDAS-SIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQS-SDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLAIKQNKSSFKLPMFDADEFPEFP-----VIDPKVSIEVNAPFLVDAFKKIAPVIEQ-TSHKRELAGILMQFDKHQTLSVVGTDTKRLSYTQLEKIEEDISCILPKRALLEILKLFYE----------NFSFKSDGMLAVIENEMHTFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST-----IKLTLEKNNALFESLDSEHSETAKTSVEIE-IEKAFHLGVNAKFFLEALNALGTTQFVLRCNEPSSPFLIQESLDEKISTLMMPIT 375
13 -88.1003p16_A mol:protein length:408 DNA polymerase III subunit beta  ali model follow..  15  13LTFRLLRESFADAVSWVAKNLPARPAV-PVLSGVLLTGSDNGLTISGFDYEVSAEAQVGA--EIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPE------ETGLLPAELFAEAISQVAIAAGR-DDTLPMLTGIRVEI-LGETVVLAATDRFRLAVRELKWSASEAAVLVPAKTLAEAAKAGIGGSD-VRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA--DRGAQVRMEFADGSVRLSAGADDVGRAEEDLV-VDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDYVYLLMPVR 399
14 -85.3005ah2_A mol:protein length:401 DNA POLYMERASE III SUBUNIT BETA  ali model follow..  16  15LKFRVVREDFADAVAWVARSLPTRPTI-PVLAGVLLTGTDEGLTISGFDYEVSAEVKVSAEIA--SAGSVLVSGRLLSDITKALPAKPVEVSVEGTRVSLTCGSARFSLPTLAVEDYPALPALPE------ETGVIASDLFAEAIGQVAVAAGR-DDTLPMLTGIRVEI-SGESVVLAATDRFRLAVRELTWVTTEAAVLVPAKTLAEAAKAGTDGNQ-VHLALGSGASVGKDGLLGIRSEGKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVA--DRGAQIRMEFSDDTLKLSAGADDVGRAEEDLP-VDFAGEPLTIAFNPTYLTDGLGSLHSERVTFGFTTPSRPAVLRPAGEDDYVYLLMPVR 398
15 -85.2006deg_A mol:protein length:381 Beta sliding clamp  ali model follow..  17  3MRITVDRSQFFKSLGRVHRVVERRNTV-PILSNVLIDAENGSVQLKATDLDLEVTESFTVNIE--KAGAITVPAYLLYDIVRKLPDGSIVLSVDENQMSIVSGCTHFQLQCLPKIDFPESL-----PGQFGCRFFLSASKLKHLLDCTQFAIST-EETRYYLNGIYFHIVHDDKLRLVATDGHRLAQVDMEAPDGMPGVIIPRKAVGELQKLLSEEID------GDVCIELSETKIRFSLGSVVFTSKLVDGTFPDYQRVIPLGNDRKLIVNRQDFSSAVDRVSTIS-NDRGRAVKLTIEHGQLKLVVNNPDSGSAEDQLA-ATYTSEPLEIGFNSRYLLDIAGQLSSDEMVFMLSDAVAPALIRDNNNAEVLYVLMPVR 374
16 -83.9006d47_A mol:protein length:410 Beta sliding clamp  ali model follow..  16  15LKFRLVRESFADAVSWVAKNLPTRPAV-PVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEIA--SPGTVLVSGRLLSDITRALPNKPVDFYVDGNRVALTCGNARFSLPTMAVEDYPTLPTLPE------DTGTLPAELFSEAIGQVAIAAGR-DDTLPMLTGIRVEI-SGEKVVLAATDRFRLAVRELTWNDIEAAVLVPAKTLGEAAKANTDGSE-VRLSLGAGMGVGKDGLLGISGDGKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVA--DRGAQVRMEFADGMLRLSAGADDVGRAEEDIA-VEFAGQPLTIAFNPTYLIDGLASLHSERVSFGFTTPGKPALLRPASAEDYVYLLMPVR 401
17 -83.5005wce_A mol:protein length:379 DNA polymerase III subunit beta  ali model follow..  17  2MKLTIERAALLKALGHVQSVVERRNTI-PILSNILLSAEGDRLSFSATDLDMEIIDEGFAQID--VPGQITAPAHTLYEIVRKLPDGSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPVMS-----SDGLSSRIAVDTNELIRLIDKTRFAIST-EETRYYLNGLYVHTVGETKLRAVATDGHRLALAEMPAPEGIPGVIVPRKTIAEARRLMESAGETVDLQVSP-------QKVRFEFGAAALTSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATIS-AEKSRSVKLAVEPGRITLTVRNMEAGQAVEEVE-VDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPVDPGVKYVLMPLR 372
18 -82.7003t0p_A mol:protein length:371 DNA polymerase III, beta subunit  ali model follow..  18  2MKLICSKANLLKGVNIVSKAVPTRTTM-AILECILIDASANEIKLMANDMELGIETIIDG--TIEERGIIALDAKIFSEIVRKLPDNDVTIETDASKTVISCEKAKFNIIGKSGDDFSYIP-----YVERNESIVLSQFTLKEVIRQTIFSIAD-NDNNKLMTGELFEI-EENKLRVVSLDGHRISIRYIEMKNDSKKVVVPGKTLQEISKIIGSADEDVVIYITN-------NHIVFEFENTTVVSRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRI-NSFIGSMNEDID-IDKDGKDIMIGFNPKFFIDALRVIDEEEVNLYMVNPKAPCFIKD-DEGKFIYLILPVN 365
19 -82.6006dlk_A mol:protein length:387 Beta sliding clamp  ali model follow..  18  4LKLIVETKTLVQSLGFASSVVEKRNVI-PEYANIKLSAQDGNLELSSTNMDLYLSQKIAV--QVVSEGECTVSTKTLNDIVRKLPDSELTLTDGTTGLEIKGKNCKFNLFTLPVSSFPAMD-----SINPEASFKISCTDFAKIIESTKFSISL-DETRYNLNGVYLHI-KDKEFCSASTDGHRLSISWVTLEKKNFGVILPQKSAEEILKIVKDPKNI-----EDIEILLNSNKIKFICENTIMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIIT-VEKFRAVKLSLSRETLEISAVGEARGNAKEVINSEYNSDESLAIGFNPQYLEDVLKAVKSDLVELYFSDVSAPVLIKFPENPKDIFVVMPVK 380
20 -82.4005w7z_A mol:protein length:387 DNA polymerase III subunit beta  ali model follow..  18  4LKLIVETKTLVQSLGFASSVVEKRNVI-PEYANIKLSAKDGNLELSSTNMDLYLSQKIAV--QVVSEGECTVSTKTLNDIVRKLPDSELTLTDGTTGLEIKGKNCKFNLFTLPVSSFPAMD-----SINPEASFKISCTDFAKIIESTKFSISL-DETRYNLNGVYLHI-KDKEFCSASTDGHRLSISWVTLEKKNFGVILPQKSAEEILKIVKDPKNI-----EDIEILLSSNKIKFICENTSMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIIT-VEKFRAVKLSLSRETLEISAVGEARGNAKEVINSEYNSDESLAIGFNPQYLEDVLKAVKSDVVELYFSDVSAPVLIKFPENPKDIFVVMPVK 380
21 -81.7006man_A mol:protein length:387 Beta sliding clamp  ali model follow..  18  4LKVIVETKTLVQALGFASSVVEKRNII-SELANIKLLAKDGLLELSSTNMDLYLSQKIGV--QVVSEGELTVSTKTLNDIVKKLPDSELTLTDGTTGLEITGKNCRFNLFTLPVESFPVMD-----NINPEASFKISCAEFAKIIESTKFSVSL-DETRYNLNGIYLHV-KDSEFYAASTDGHRLSVSSVVLAEEDFGVILPQKSAEEILKIVKDSKNA-----ADIEILLSSNKIKFICENVIMLSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIIT-VEKFRAVKLSLSGEALEISAIGEARGNAKEVIN-SSKETENLDIGFNPQYLEDVLKAIKSDLVELYFSSVSAPVLIKFPESPKDIFVVMPVK 380
22 -80.6006DJK Entity 1(prereleased)  ali follow..  19  4LKLIVETKTLVQSLGFARSVVEKRNVI-PEYANIKLSAKDGNLELSSTNMDLYLSQKIAV--QVLSEGEITVSTQTLSDIVRKLPDSELTLTEDIMKLEIKGQNCQFNLFTLPVSSFPAMD-----SIKPEVSFKISCADFAKIIESTKFSISL-DETRYNLNGIYLHI-KDKEFFAASTDGHRLSISWITLEEKNFGVILPQKSAEEILKIVKDIHEDIEILLSS-------NKIKFICENTILLSKLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIIT-VEKFRAIKLSLSRKTLEISAVGEARGNAKEIITAEYNCDESLVIGFNPQYLEDVLKAVKSNLVELYFSDASAPVLIKFPQNPKDIFVIMPVK 382
23 -80.6006d46_A mol:protein length:389 Beta sliding clamp  ali model follow..  19  4LKLIVETKTLVQSLGFARSVVEKRNVI-PEYANIKLSAKDGNLELSSTNMDLYLSQKIAV--QVLSEGEITVSTQTLSDIVRKLPDSELTLTEDIMKLEIKGQNCQFNLFTLPVSSFPAMD-----SIKPEVSFKISCADFAKIIESTKFSISL-DETRYNLNGIYLHI-KDKEFFAASTDGHRLSISWITLEEKNFGVILPQKSAEEILKIVKDIHEDIEILLSS-------NKIKFICENTILLSKLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIIT-VEKFRAIKLSLSRKTLEISAVGEARGNAKEIITAEYNCDESLVIGFNPQYLEDVLKAVKSNLVELYFSDASAPVLIKFPQNPKDIFVIMPVK 382
24 -79.7004trt_A mol:protein length:368 DNA polymerase III subunit beta  ali model follow..  18  2MKANVTKKTLNEGLGLLERVIPSRSSN-PLLTALKVETSEGGLTLSGTNLEIDLSCFVPAEVQ--QPENFVVPAHLFAQIVRNLGGELVELELSGQELSVRSGGSDFKLQTGDIEAYPPLSFPAQ------ADVSLDGGELSRAFSSVRYAASN-EAFQAVFRGIKLEH-HGESARVVASDGYRVAIRDFPASGDGKNLIIPARSVDELIRVLKDGEARFTY---------GDGMLTVTTDRVKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAAEG-DYGRAQDTLSVQGGTEQAMSLAFNARHVLDALGPIDGD-AELLFSGSTSPAIFRAGGGGGYMAVMVTLR 361
25 -15.1001b77_A mol:protein length:228 PROTEIN (SLIDING CLAMP)  ali model follow..  12  2..............................................................................................................................................KLSKDTIAILKNFASINSGI------LSQGKFIMTRAVNGTTYAEANISDEIDFDVALYDLNSFLSILSLVSDDAEISMHTDGNIKIADTRSTVYWPAADKSTIV------FPNKPIQFP-VASVITEIKAEDLQQLLRVSRGLQIDT----IAITNKDGKIVINGYNKVEDSGLTRPKSLTLTDYDGSNNFNFVINMANMKIQPGN-YKVMLWGAGDKVAAKFESSQVSYVIAM... 220
26 -14.1001rwz_A mol:protein length:245 DNA polymerase sliding clamp  ali model follow..  13  3....................................................................................................................................DVIMTGELLKTVTRAI----------VALVSEARIHFLE-KGLHSRAVDPANVAMVIVDIPKDEKTIGVDMDRIFDISKSIST-KDLVELIVED------ESTLKVKFGSVEYKVALIDPSAIRKEPRIPEELPAKIVMDAGEFKKAIAAADKISDQ-----VIFRSDKEGFRIEAKG-DVDSIVFHMELIEFNGGEARSMFSVDYLKEFCKVAGGDLLTIHL-GTNYPVRLVVGGRAKVEYILAP.. 240
27 -11.6003hi8_A mol:protein length:247 Proliferating cell nuclear antigen PcnA  ali model follow..  10  3....................................................................................................................................KAIVSAATLRDALDSV----------SVLVDECKIRLNE-ESLSIRAVDPANVGMVDLTLDAAAFEIGVNLSRLEEVAGMAGA-GDLIHLTLDEE-----TRKLNIRIDGLSYTLALIDPDSIRQEPDIPDDLAANIVLEGTHLDRGIKAADMVSDH-----IRLRVDGAEETFHIEAEGDTDDLPPADLISIEAGAADSLFSLDYLKDMNKAIPDAEVTVEL-GEEFPVKLHAEGMGTITYMLAP.. 242
28 -11.3002io4_B mol:protein length:246 DNA polymerase sliding clamp C  ali model follow..  12  5..............................................................................................................................KVIDAVSFSYILRTVGDFLSEANFIVTK--------EGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNL------EFPFKAQLLTITFADIIDELSDLGEV-----LNIHSKENKLYFEVIGDKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRSDSMELYF-GSQIPLKLR-PQEGYGDFYIAP.. 243
29 -11.2006aig_A mol:protein length:263 DNA polymerase sliding clamp 1  ali model follow..  11  17....................................................................................................................................MFRYEAKVFKELVDSVS-KILDEGLFIITGEGLRLRGMDPARVALVDIPSSSFFDFYMAGDVERVELGVNMETLKGVVARAKK-GDQLEVRVRED-----KVLFIVESVVLRRYLLPNLEVIVDVPEDISLEFDATATVIADVVKKTLRDVELVGDI-----VEFDAGEDYLSIRSVGPERRRVETRLTRESPAKEPATSRYDVGYLKRMLGVAKAESIELSF-STDKPLKMV-PDGSRVTYLLAP.. 260
30 -11.1003k4x_A mol:protein length:798 Proliferating cell nuclear antigen  ali model follow..  12  408STLSLPSSEFSKIVRDLSQLSDS----------INIMITKETIKFVADGDIGSGSVIIKIKLEMDQPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEQFDLKSGFLQFFLA-------PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDCVQL------VNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADGFVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPK. 793
31 -10.4002hii_A mol:protein length:257 PCNA1 (SSO0397)  ali model follow..  1...........................................................................................................................................MFKIVYPNAKDFFSFINSITNVTDSIILNFTE-DGIFSRHLTEDKVLMAIMRIPKDPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIKSGAKSTIYIKAEKGQVEQLTEPKV------NLAVNFTTDESVLNVIAADVTLVGEE-----MRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKDTSASSSYSAEMFKDAVKGLRSAPTMVSF-GENLPMKID-VSGGHMIFWIAP.. 247
32 -10.4003aix_A mol:protein length:246 DNA polymerase sliding clamp C  ali model follow..  11  1............................................................................................................................................MRVKVIDADAFSYIFRTLEEFIDEITLDFTS-DGLKIRGIDPSRVTFIDILIPAKEEKVGVKLEDFTDVLKTVTKNDSYLETDENQNIKVTLDGVYERTFTFPSIVASEIETPNLNL------EFPFKAKALTVTFTDIIDEIEDIGGDS----ITFKAEGGKLYLSANSDTIELSTENGGLLESEGGDAESVYGLEYVVNTSKMRKSDTVEIAF-GSQIPLKLR-PQGGYADFYIAP.. 243
33 -10.1006e49_A mol:protein length:272 Proliferating cell nuclear antigen  ali model follow..  11  6........................................................................................................................................QDPMLEAKFEEASLFKRIIDGFKDCVQLVNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADGDVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 260
34 -9.9503aix_B mol:protein length:248 DNA polymerase sliding clamp B  ali model follow..  10  1...........................................................................................................................................MIKATYSSAKDFYSLLSGLLKVTDEIILNFTE-DSIFSRYLTDDKVLMVIFKIPDKPLGIKININDLKKILGKAKSKSATVTLEETEAGLKVTKTGTRSNIYIKGEKTSIDQLTEPKV------NLSVTFTTDGDVLKDIARDLSLVGEE-----VEISADENTVTLSTEEAGRTYKSLLKQDKPLKESPSKAVYSIEVLKDVFKVTSSQNVTVGF-GNNIPMKIE-DSGGQLIFWIAP.. 246
35 -9.9401sxj_F mol:protein length:283 Proliferating cell nuclear antigen  ali model follow..  11  17........................................................................................................................................MASMLEAKFEEASLFKRIIDGFKDCVQLVNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADGDVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 271
36 -9.9104yhr_A mol:protein length:266 Proliferating cell nuclear antigen  ali model follow..  12  12..............................................................................................................................................SLFKRIIDGFKDCVQL------VNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADGFVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 254
37 -9.8102ix2_C mol:protein length:259 DNA POLYMERASE SLIDING CLAMP A  ali model follow..  14  24..............................................................................................................................................RVLKDIIQALARLVDE------AVLKFKQ-DSVELVALDRAHISLISVNLPRDEFKFGFNTQYLMKILKVAKR-KEAIEIASESPD----SVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDN-----VVVEGHEDRILIKAEGESEVEVEFSKDTGGLQSKESKNSYSAEYLDDVLSLTKSDYVKISF-GNQKPLQLF-EGGGKVTYLLAP.. 257
38 -9.7902hii_C mol:protein length:252 PCNA3 (SSO0405)  ali model follow..  12  1............................................................................................................................................MKVVYDDVRVLKDIIQALARLVDEAVLKFKQ-DSVELVALDRAHISLISVNLPNDEFKFGFNTQYLMKILKVAKR-KEAIEIASESP-----DSVIINIIGSTNREFNVRNLEVSEQEIPEINQFDISATISSDGFKSAISEVSTVTDN-----VVVEGHEDRILIKAEGESEVEVEFSKDTGGLQSKESKNSYSAEYLDDVLSLTKSDYVKISF-GNQKPLQLF-EGGGKVTYLLAP.. 242
39 -9.7605jne_D mol:protein length:258 Proliferating cell nuclear antigen  ali model follow..  11  1...........................................................................................................................................MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSDILREGNN-TDTLTLIADNTPDSIILLFEDTKKDDIAEYSLKLMDIDADFLGIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITCETIKFVADGDVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 252
40 -9.7105zut_A mol:protein length:289 Proliferating cell nuclear antigen  ali model follow..  11  1...........................................................................................................................................MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKE-DGIIAQAVDDSRVLLVSLEIGVEPVTLGMDLTSLSKILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADGFVDMEHPETSIKLEMD-QPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.. 252
41 -9.5303lx1_A mol:protein length:255 DNA polymerase sliding clamp 1  ali model follow..  12  11..............................................................................................................................................KEFADLIATASNLIDE------AAFKFTE-EGISMRAMDPSRVVLIDLNLPEEPETIGINMDQFKKILKRGKAKDTILRKGDENFLEITFEGTAKRTFRLPLIDVEELELELPE------LPFTAKVVLLGEVLKEGIKDASLVSDA-----IKFIAKENEFTMKAEGERLTLEDEGLLDLEVE-EETKSAYGIRYLSDMVKGIGADEVILRF-GNEMPLQME-RDEGRLTFLLAP.. 245
42 -9.4305a6d_A mol:protein length:249 DNA POLYMERASE SLIDING CLAMP  ali model follow..  12  11..............................................................................................................................................KEFADLIATASNLIDE------AAFKITE-EGVSMRAMDPSRVVLIDLNLPESPETIGINMDHFKKILKRGKSKDTILRKGDENFLEITFEGTAKRTFRLPLIDVEELELELPE------LPFTAKVVLLGEVLKEAIKDASLVSDS-----LKFIAKEDEFTMKAEGEKLTLEDEGLLDLEVE-EETRSAYGISYLADMVKGIGADEVTLRF-GTEMPLQMD-RDEGKLTFLLAP.. 245
43 -9.4101ge8_A mol:protein length:249 PROLIFERATION CELL NUCLEAR ANTIGEN  ali model follow..  11  6..............................................................................................................................VFEGAKEFAQLIDTASKLIDEAAFKVTE--------DGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPE------LPFTAKVVVLGEVLKDAVKDASLVSDS-----IKFIARENEFIMKAEGEKLTLEDEGLLDIEVQ-EETKSAYGVSYLSDMVKGLGADEVTIKF-GNEMPMQME-RDEGRLTFLLAP.. 245
44 -9.3901ud9_A mol:protein length:245 DNA polymerase sliding clamp A  ali model follow..  16  9..............................................................................................................................................RDLKAIIQALLKLVDE------ALFDIKP-EGIQLVAIDKAHISLIKIELPKEEFKFGFNTQYMSKLLKAAKR-KEEIIIDADSPEVVK----LTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADT-----LLISGNEEKVVVKGEGENKVEVEFSKDTGSLANKESSSAYDVEYLNDIISLTKSDYVKVAF-ADQKPMQLE-EGGGKVTYLLAP.. 242
45 -9.3903p91_A mol:protein length:265 Proliferating cell nuclear antigen  ali model follow..  12  15..............................................................................................................................................ALFKRVVESLKSTIDK------TNFDCSD-AGIAVQCMDNSHVSLVSLLIETKPITLGINLTHLSKILKALDN-DCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDIEAESVE-IPELQSDAIITLSSAEFLKITKDFSALGDD----SITIGCTKNEVTLTTKGSALENVDSNGLQIEHN-KDVTASFALKQISEFAKSAPADNVKLSLSGQAPLIMEFKGEACVLKFYLAP.. 255
46 -9.2805tup_A mol:protein length:259 Proliferating cell nuclear antigen  ali model follow..  10  1..........................................................................................................................................GMLEARLEQASLLKRVVDAIKDLVQDCNFDCND-SGIALQAMDNSHVALVSMLLKARNIALGINLVSLTKVLRAAQN-EDILTLKADDSPDAVNLMFESAETDRISEYDIKLMDIDQEHLAIPETEYAATVEMPSAEFQRICRDLNALSES-----VVIEATKEGVKFSCQG-DIGSGSVTIRQHTSVSEPVALTFSLKYLVNFCKATSSSKVTLCLSQEVPLLVEYGLGSGHLRFYLAP.. 253
47 -9.2503lx2_A mol:protein length:259 DNA polymerase sliding clamp 2  ali model follow..  11  11..............................................................................................................................................REFESLIATLEKFFDE------AVFQVNM-EGIQMRAIDPSRVVLVDLNLPESEEAIAFDLKRFLKVLKLARSRDTVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIEIPSL------PWTVKAVVLAGALKRAVKAAKLVSDS-----IYFMATPEKLTFKAEGNVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLAADEVIIRF-GFDIPLLLK-RDAGEVSFLIAP.. 246
48 -9.0202zvw_A mol:protein length:275 Proliferating cell nuclear antigen 2  ali model follow..  10  2..............................................................................................................................GSSSSGLVPRGSHMLELRLVQGSLLKKVLEAVKDLVNDANFDCST-TGFSLQAMDSSHVALVSLLLRSRNLSMGMNLGNMSKMLKCAGN-DDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDT-----VVISVTKEGVKFSTAG-DIGTANIVLRQNTTVNEPVSLSFALRYMNSFTKATPSETVTISL-SSELPVVVE-AEMGYIRYYLAP.. 267

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.