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Query: gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SIQSDLRNLIQETTKQDVDVYKVIKTSEGRKNLITSLKKSYEVNPDKTTKLLLDAWKQSAEKGEIDIEKINFPDVGIYATGNDPLKIELKVEYFDMEYQDLNNFSINAKLNYNFNWHGNYSSNGFAAKKGDKHVFDLPLAIKPSSKNQSKTISFITKTGEGVDTEWIEFPVSLSWSLQGKINKVKEILRKSFWKAMILEQILNTQLISLDTCFSLast
1 -6.5703viq_A mol:protein length:122 Swi5-dependent recombination DNA repair protein 1  ali model follow..  16  2.........HMQLLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQ........................................................................................................................................................ 54
2 -6.3704ir7_A mol:protein length:541 Long chain fatty acid CoA ligase FadD10  ali model follow..  12  356.........LAATDGIGPTAPGAGPSASFGTLWIKSNMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYSSEMIICGGVNIAPDE--VDRIAEGVSGVREAACYEIPDEEF---GALVGLAVVASAELD-------ESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGK--VMRASLAAAATADKARV............... 537
3 -6.0505kgq_A mol:protein length:112 Uncharacterized protein  ali model follow..  19  4...................MGHMVKISHEDTQRIKTAFLSYAQGQDKVTEAMIDSWEQLQEKKKGRAAANGYDRSAFFSVASDEQYVRFIAQHFPCAPEEEKPPEIDA.......................................................................................................... 103
4 -6.0201wjt_A mol:protein length:103 Transcription elongation factor S-II protein 3  ali model follow..  13  30..TEGALDLLKKLNSCQMSIQLLQTTRIGV--AVNGVRKCSDKEVVSLAKVLIKNWKRLLDS........................................................................................................................................................ 88
5 -5.9105dfm_A mol:protein length:534 Maltose-binding periplasmic protein,Telomerase-associated protein 19  ali model follow..  20  408RIYGQFKCFVKSTIQEQLDKIKNLSSKELAKNKIFKFLSEYNKNNQKQDELSHDYYENAQREASLAVDDFYFINGRIYKTNHDILILQAH-HVYQMQKPTLQLLQAASEINQN..................................................................................................... 534
6 -5.9105odd_A mol:protein length:92 Mediator of RNA polymerase II transcription subunit 26  ali model follow..  22  28..MVAVLEVISSLEKYPITKEALEETRLGK--LINDVRKTKNEELAKRAKKLLRSWQKLIEP........................................................................................................................................................ 86
7 -5.8306agf_B mol:protein length:218 Sodium channel subunit beta-1  ali model follow..  13  13........LVSSACGGCVEVDSETEAVYGMT---FKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWN--SRGTKDLQDLSIFIT-NVTYNHSGDYE............................................................................................. 120
8 -5.8302eef_A mol:protein length:156 Protein phosphatase 1, regulatory (Inhibitor) subunit 3B  ali model follow..  11  22...ADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFE--KTVKIRMTFDTWKSYTD-------PCQYVKDTYAGSDRDTFSFDISLPEKIQSYERM-EFAVYYECNGQTYWDSNRGKN........................................................................................... 132
9 -5.7104zy7_A mol:protein length:143 Uncharacterized protein MSMEG_5817  ali model follow..  11  46AVRLTARTLAAVAPGASVEVFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVA.......................................................................................................................................... 125
10 -5.6804nss_A mol:protein length:148 Mycobacterial protein  ali model follow..  11  53AVRLTARTLAAVAPGASVEVFVAVQCISGPKHTRGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVA.......................................................................................................................................... 132

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.