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Query: gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPKVISQKEFNILSRTKERVNFQIVYTKQRNGLHKAAKEYFFKDKDFTIIEDTPDTPDQPDGPCITKGPKEPGGPEEPNGPDKPEDPKDPDTPDVSEGPKEQGGQKDPGGPDDPSEGKQKVSKPDKYVTHRELDEKLKDFATKADFKRVEDKVDVLFELQKTQGEQIKVQGEQIKAQGKQIEQLTETVKVQGEQIRAQGEQIKAQSEEIKEIKVEQKAQGEQIKELQVEQKAQGKTLQLILKTLEKMNERLEKLESKLast
1 -29.8001wck_A mol:protein length:220 BCLA PROTEIN  ali model follow..  25  2..........................................AFDPNLVGPTLPPIPTLPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGL................................................................................................................................... 87
2 -26.4004hsi_A mol:protein length:703 Envelope glycoprotein B  ali model follow..  11  1...........................................DPAAPTSPGTPGVAATQAANGGPATPAPPPLGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG................................................................................................. 118
3 -18.6003iox_A mol:protein length:497 AgI/II  ali model follow..  12  421............................................DNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLE.............................................................................................................................................. 491
4 -18.2002pne_A mol:protein length:81 6.5 kDa glycine-rich antifreeze protein  ali model follow..  7  4...........................................ADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP......................................................................................................................................... 81
5 -18.0003bog_A mol:protein length:81 6.5 kDa glycine-rich antifreeze protein  ali model follow..  15  1...........................................CKGADGAHGVXGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP...................................................................................................................................... 81
6 -15.2001nay_A mol:protein length:56 Collagen-like peptide  ali model follow..  23  1......................................................GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKD............................................................................................................................................................. 46
7 -14.9003dgs_A mol:protein length:227 Coat protein A  ali model follow..  16  63..........................................LAIPENEGGGSEGGGSEGGGSEGGGTPPEYGDTPIPGIYINPLDGTYPGTEQNPANPNPSLEESHP..................................................................................................................................................... 131
8 -14.3004dmu_A mol:protein length:87 Collagen III derived triple-helical peptide  ali model follow..  19  1..............................XGPPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGVMGFPGPPG-PPXXGPPGPPGPPGPRGQPGVMGFPGPPGPPX........................................................................................................................................... 87
9 -14.1002klw_B mol:protein length:32 (DOG)10  ali model follow..  41  1.....................................................................XDPGDPGDPGDPGDPGDPGDPGDPGDPGDP.............................................................................................................................................................. 30
10 -14.1003knq_A mol:protein length:223 Attachment protein G3P  ali model follow..  14  62..........................................LAIPENEGGGSEGGGSEGGSEGGGTKPPEYGDTPIPYIYINPLDGTYPGTEQNPANPNPSLEESHPLN................................................................................................................................................... 132
11 -14.1005vj4_A mol:protein length:375 Uncharacterized protein  ali model follow..  15  1..................................SGVRPESGVGPESGVGPEAGVGPEAGVGPESGVGPEAGVGPEAGVGPESGVGPESGVGPEAGVRPEAGVRPEAGAGTDTETEEEIEEVVGDEEALAYLNETVIDPKLIALL................................................................................................................ 111
12 -13.2005cva_B mol:protein length:71 Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain  ali model follow..  19  1....................................................GSGPPGPPGPPGPPGARGQAGVMGFPGPPGPPGPPGRDATDQHIVD............................................................................................................................................................... 46
13 -13.0005yan_C mol:protein length:32 Collagen  ali model follow..  25  2............................................................GKPGPDGPDGPKGKPGPKGKPGKPGKPGKPG...................................................................................................................................................................... 32
14 -12.7005mv4_X mol:protein length:46 synthetic peptide containing the citrullinated collagen type II epitope CII616-639,Collagen alpha-1(II) chain,synthetic peptide containing the citrullinated collagen type II epitope CII616-639  ali model follow..  29  2........................................................PPGPPGPPGPPGPPGARGAPGERGETGPPGPAGFAGPPGPPGPP............................................................................................................................................................. 45
15 -12.1003hqv_B mol:protein length:1028 Collagen alpha-2(I) chain  ali model follow..  7  515..........................PGESGAAGPSGPIGIRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGEIGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSP................................................................................................................. 632
16 -12.1005ctd_B mol:protein length:71 Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain  ali model follow..  23  1....................................................GSGPPGPPGPPGPPGARGEPGNIGFPGPPGPPGPPGRDATDQHIVDV.............................................................................................................................................................. 47
17 -11.9003hqv_A mol:protein length:1056 Collagen alpha-1(I) chain  ali model follow..  12  955..........................QGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQDGGR..................................................................................................................................... 1052
18 -11.9005ctd_C mol:protein length:72 Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain  ali model follow..  18  1....................................................GSGPPGPPGPPGPPGARGQAGVMGFPGPPGPPGPPGKEASEQR.................................................................................................................................................................. 43
19 -11.4001i3q_A mol:protein length:1733 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT  ali model follow..  18 1593.PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSSPTSPSSPTSPASPTSPSSPTSPSSPTSPSSPTSPSSPTSPNSPTSPSSPTSPGSPGSPASPKQDEQKHNENENSR.............................................................................................................................. 1733
20 -11.2005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  12  433.........................................................KKLGFNWNPLVPDPDPSNPENPNNPDPNPDEPG--TPVPTDPENPLPDQD...................................................................................................................................................... 480
21 -11.1005nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  16  464...................................................KKLGFNWNPLVPDPD--PSNPENPNNPDPNPDEPGTPVPTDPENPLPDQD............................................................................................................................................................ 511
22 -11.1002v53_B mol:protein length:33 COLLAGEN ALPHA-1(III) CHAIN  ali model follow..  24  1......................................................GPPGPPGPPGPSGPRGQPGVMGFPGPKGPPGAP.......................................................................................................................................................................... 33
23 -10.9005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  7  228.PSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGGSGWAETPRTDRGGDSIETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDES 485
24 -10.9002drx_A mol:protein length:30 collagen like peptide  ali model follow..  35  2.......................................................................PGPPGPPGPPGLPGLPGPPGPPGPPGPP.............................................................................................................................................................. 29
25 -10.9006ez8_A mol:protein length:3138 Huntingtin  ali model follow..  7  421...AGGGSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSALTASVKDEISGELAASSGVSTPGSAGHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDIGQSTDDDS 674
26 -10.7005i4d_A mol:protein length:343 Superantigen-like protein  ali model follow..  12  19..........................VDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKTLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMT....................................................................................................... 146
27 -10.6002drt_A mol:protein length:30 collagen like peptide  ali model follow..  35  2.......................................................................PGPPGPPGPPGLPGPPGPPGPPGPPGPP.............................................................................................................................................................. 29
28 -10.6005mub_X mol:protein length:33 triple-helical peptide containing the citrullinated C1 epitope of collagen type II,Collagen alpha-1(II) chain,triple-helical peptide containing the citrullinated C1 epitope of collagen type II  ali model follow..  24  1......................................................GPPGPPGPPGPPGARGLTGRPGDAGPPGPPGPP.......................................................................................................................................................................... 33
29 -10.3005cva_A mol:protein length:71 Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain  ali model follow..  19  1.................................................GSGPPGPPGPPGPPGARGEPGNIGFPGPPGPPGPPGRAPTDQHIKQVCMRVIQEHAASLKRPDSGAT............................................................................................................................................. 71
30 -10.3002klw_A mol:protein length:32 (PKG)10  ali model follow..  48  1......................................................................XPKGPKGPKGPKGPKGPKGPKGPKGPKGPK............................................................................................................................................................. 30
31 -10.3002ba2_A mol:protein length:85 Hypothetical UPF0134 protein MPN010  ali model follow..  59  32..........................................................................................................................................................................................................TVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQGINKRLDNLES. 85
32 -10.3002wd6_A mol:protein length:349 AGGLUTININ RECEPTOR  ali model follow..  18  301...................................................SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPKTP.............................................................................................................................................................. 349
33 -10.2005ctd_A mol:protein length:71 Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain  ali model follow..  21  1....................................................GSGPPGPPGPPGPPGARGQAGVMGFPGPPGPPGPPGRAPTDQ................................................................................................................................................................... 42
34 -10.2003h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1  ali model follow..  16 1615.PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPSSPTSPS........................................................................................................................................ 1752
35 -9.8003gdb_A mol:protein length:937 Putative uncharacterized protein spr0440  ali model follow..  8  9..................................................ENLYFQGEETAVPENSGANTEVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE.................................................................................... 132
36 -9.4305yan_A mol:protein length:32 Collagen  ali model follow..  31  3.......................................................................PKGPKGPKGKPGPDGDPGDPGDPGPKGPK............................................................................................................................................................. 31
37 -9.4101qy6_A mol:protein length:274 serine protease  ali model follow..  31  218.....................................................DDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNN-NSDNPDAA.................................................................................................................................................. 274
38 -9.3203jcm_A mol:protein length:2413 Pre-mRNA-splicing factor 8  ali model follow..  10  5..................................PPPPPGFEEDSDLALPPPPPPPPGYEIEELDNPMVPSSVNEDTFLPPPPPPPSNFEINAEEIVDFTLPPPPPPPGLDELETKAEKKVELHGKRKLDIGKDTFVTRKSRKRAKKMTKKAKRSNLYTPKAEMPPEHLRKIINTHSDMASKMYNTDKKAFLGALKYLPHAILKLLENMP............................................... 180
39 -9.2205fur_J mol:protein length:677 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6  ali model follow..  5  464.VKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPA........................................... 676
40 -9.1803a1h_A mol:protein length:27 collagen-like peptide  ali model follow..  38  1..........................................................................PPGPPGPPGPPGPTGPPGPPGPPGPP............................................................................................................................................................. 26
41 -9.1404rco_A mol:protein length:295 Putative uncharacterized protein  ali model follow..  8  3........................................SSENLYFQGTTLSSTKVEAPQSTPPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKFKDLRA................................................................................................................. 106
42 -9.0604d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  11  131...........................................QKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA................................................................................................................................. 215
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.