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Query: gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MELRNTKLEQLFYIYHRNLKYRCPMQYLTKRGFNLQDLLSVGGGLAYLGEKQWLNLSLYNFNNQLVGFLSRKVGFEKKFLYLPINKPPSKSESFLGLKHLPTETNTIYLVEGDFDWLAFRKGGILNCLPLCGLTLSDKQMKFFQQSKIEKVVLCLDNDFAGKVAAANLERILKNAGFQVKVVQLKGKVKDWNELLLLYPKNWAKALRDHLALLast
1 -79.2004e2k_A mol:protein length:329 DNA primase  ali model follow..  21  39.RGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQPKYLNSPETPIFQKRKLLYNLDKAIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKL-TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSG-MDPDEYIGKYGNDFTTFVKNDKKS 259
2 -78.4005w33_A mol:protein length:325 DNA primase  ali model follow..  17  40.RSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFEFEELEAAGLHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDAKYVNTPETLLYKKSSVMFGIDLAIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGGEHLAMLRRLMRGELIYVFDGDEAGRAAALKAFDGEQKLAGQSFVAVAPDG-MDPCDLRLKCGDALRDLVARRTPL 268
3 -78.0005guj_A mol:protein length:324 DNA primase  ali model follow..  18  37.RGFTKELINEFQIGYALDSWDFITKFLVKRGFSEAQMEKAGLSGYFDRFRNRVMFPIHDHHGAVVAFSGRALGSQPKYMNSPETPLFHKSKLLYNFYKAIRKQERAVLFEGFADVISAVSSDVKESIATMGTSLTDDHVKILRRN-VEEIILCYDSDKAGYEATLKASELLQKKGCKVRVAMIPDG-LDPDDYIKKFGGEKFDIIDASVTV 258
4 -77.3003b39_A mol:protein length:322 DNA primase  ali model follow..  20  39.RGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDPKYLNSPETDIFHKGRQLYGLYEANAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA-TNNVICCYDGDRAGRDAAWCALETYMTDGRQLRFMFLPDG-EDPDTLVRKEGKEFEARMEQAMPL 261
5 -76.9001dd9_A mol:protein length:338 DNA PRIMASE  ali model follow..  20  45.RGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDPKYLNSPETDIFHKGRQLYGLYEANAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA-TNNVICCYDGDRAGRDAAWRALETYMTDGRQLRFMFLPDG-EDPDTLVRKEGKEFEARMEQAMPL 267
6 -73.9005vaz_A mol:protein length:389 DNA primase  ali model follow..  19  45.RGLTGEIARDFGLGFAPPGWDNLLKHLGGDNLQLKAMLDAGLGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDPKYLNSPETPVFHKGQELYGLYEANRDLDEIMVVEGYMDVIALAQQGIRNAVATLGTATSEEHIKRLFRL-VPSILFCFDGDQAGRKAAWRALESVLQDGKRVRFLFLPEG-EDPDSLVRAEGEDAFRITQQAQPL 269
7 -68.5002au3_A mol:protein length:407 DNA primase  ali model follow..  21  133.RGIDPKVARKFDLGYAP-SSEALVKVLKENDLLEAYLETKNLGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDPKYINSPDSRVFKKGENLFGLYEAIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKF-TKKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEG-YDPDEFIKEFGKELRRLINSSGEL 351
8 -34.8001nui_A mol:protein length:255 DNA primase/helicase  ali model follow..  20  59.SGGKPGTYNVWNFGESNGRYS----ALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGS------HKSDALFGKHLW-NGGKKIVVTEGEIDMLTVMELQDCKPVVSLGHGASAAKKTCAANYQFEQIILMFDMDEAGRKAVEEAAQVLPAG--KVRVAVLP--CKDANECHLNGHDR........... 248
9 -28.3001t6t_1 mol:protein length:118 putative protein  ali model follow..  21  1......................................................................................MTKEPRNLSEWIKELKSREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGK--WEKVILLFDLDTHGERINQKMKELLSSQGF------------LVDENFRNFLKKWNIHIEEINGG 115
10 -27.0002i5r_A mol:protein length:122 Toprim domain-containing protein  ali model follow..  15  1.................................................................................................SNAMRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTGTISDARLEELADEEGYDVYLLADADEAGEKLRRQFRRMFPE----AEHLYIDRAYREVAA................... 94
11 -21.6001q57_A mol:protein length:503 DNA primase/helicase  ali model follow..  19  12.....................NGRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGS------HKSDALFGKH-LWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSGASAAKKTCAANYEYQFEQIILMFDMDEAGRKAVEEAAQVLPAG--KVRVAVLP--CKDANECHLNGHDRIMEQVWNAGPW 197
12 -9.5303ve5_D mol:protein length:194 Recombination protein recR  ali model follow..  19  13................................................KTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKYKGVYHVLHGVISKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFG--VKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV 188
13 -9.4903vdp_A mol:protein length:212 Recombination protein recR  ali model follow..  17  31................................................KTAQRLAFFIINMLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKYKGVYHVLHGVISKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFG--VKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV 206

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.