current user: public

If you have questions about the server, please let us know.

Query: gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380
# Score Template Links and tools%idFirst MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSKLast
1 -52.100PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain  ali follow..  23  1.................................................................................................................................................................................................................................................................TSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAEIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVR 124
2 -43.300PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain  ali follow..  20  1MKLTIERAALLKALGHVQSVVERRNTI-PILSNILLSAEGDRLSFSATDLDMEIIDEGFAQID--VPGQITAPAHTLYEIVRKLPDGSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPVM.................................................................................................................................................................................................................................................................... 120
3 -39.800PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain  ali follow..  12  1......................................................................................................................................NLEQSKLRRLIERTSFAMAQ-QDVRYYLNGMLLEV-SRNTLRAVSTDGHRLALCSMSAPEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQ-------HHIRATTGEFTFTSKLVDGKFPD............................................................................................................................ 116
4 -10.400PF02747.15; PCNA_MOUSE/127-254; Proliferating cell nuclear antigen, C-terminal domain  ali follow..  2....................................................................................................................................................................................................................................................................IPEEYSCVIKMPSGEFARICRDLSHIGDA-----VVISCAKNGVKFSASGETSNVDKEEEAVTIEMNEPVHLTFALRYLNFFTKATPSPTVTLSMSAD-VPLVVE-ADMGHLKYYLAP.. 127
5 -9.160PF04139.13; RAD9B_BOVIN/32-289; Rad9  ali follow..  11  1................................................................................................................................................FGKAIQALSRVSDE------LWLDPSE-KGLALRSVNSCRSAYGCVLFSILNLNCRLGMKSILPIFRCLNSLEKNVEKCKIFTRSDKCKVVIQFFCRHGIKKIHNVCFQGSRPLQVIKNMCANTLVIQPRVLAEAIVLFTSSQEE-----VTLAVTPLKVCIKSSYSEMFVGPDEFDFFQIG-IDTEITFCFKELKGVLTFSEHAPIAIHFDFPGKPMALSIDDMLLEANFIL... 255
6 -7.620PF02144.16; G3QNL8_GORGO/16-257; Repair protein Rad1/Rec1/Rad17  ali follow..  10..............................................................................................................................................RNLSTILKAIHFREHATCFATGIKVTVENAKCVQANAF---AGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEV-----LQITMSPDKPYFRLSTFDYPKDSDLMEAFHCN-QTQVNRYKISLLKPSTKALVSCKVSIRTDNR...................... 233
7 -5.420PF09116.10; DPA5_BPKVM/117-220; gp45 sliding clamp, C terminal  ali follow..  12  1...........................................................................................................................................................................................................................................................................EFDLKGEDLQRVKKASATLGLSD----ICVRTEAGSTAITLSATDAQGSSKHTFEINVGEADVDTEFKFFFKSERLNIVDQD-----YKVSIHPAGISRFLGLSLEYFI.... 100
8 -4.830PF00705.18; PCNA_HUMAN/1-125; Proliferating cell nuclear antigen, N-terminal domain  ali follow..  17........................EALKDLINEACWDISSSGVNLQSMDVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDLRAEDNADTLALVFEAPNYEMKLMDLDV........................................................................................................................................................................................................................................................................ 123
9 -4.790PF18444.1; Q6FUH1_CANGA/23-92; RNA recognition motif  ali follow..  19  15........................................................................................................................................................................................................................................................................................DLLNFVSKNTRISIQDANVEGPLLIGYVNTRDDANRLLKWNGARFAGSSLKF................................................ 66
10 -4.740PF10262.9; E6N4I4_9ARCH/4-80; Rdx family  ali follow..  12  15...........................................................................................................................................................................................................TALELAKNLLSRYGQRLNKKFSVTLDTSDGGTFEVYIDGERIFSRHEARRFPTLDEIA....................................................................................................................... 72

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.