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Query: gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKRLast
1 -117.000IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]  ali follow..  47  1.....MENISDLWNSALKELEKKVS---------------KPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELISETLYDLTGAKLAIRFIIPQSQAEEEIDLPPAKPNA-------------------------------------AQDDSNHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK..... 446
2 -110.000IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  30  2...........NPSQILENLKKELS---------------ENEYENYLSNLKFNEKQADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQS--------------------------------------------TILNPSFTFESFVVGDSNKYAYGACKAIAHKDGKLYNPIFVYGPTGLGKTHLLQAVGNASLE--MGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKDHIKE-KKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANYFEKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQ. 439
3 -15.200IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]  ali follow..  17  7........................................................................................................................................................SSETVDAEEVSFETSLRPQ-NLSQYI-GQDKVKNNTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPGDLATILTSLEPG------------DVLFIDEIHRL--SRAIEEIL---YPAMEDYCLDIVIGTGPTARSVR-LSAPLRDRFG--VIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGTPRIANRLLKRVRDFAQVRGNTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRVGLDTIAASIGEERETIEDMQEPYLLRIVTETAYNHLG............................................ 328
4 -14.600IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  9.........................................................................................................................................................SAGATIAEDVADRAIRPK-LLAEYV-GQPQVRSQEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEM---GVNLRTTSGPVLEKAGDLAAMLTN---------LEPHDVLFIDEIHRL--SPVVEEVLYPAARSIKIDLPPFTLIG--ATTRAGSLTSPLRDRFG--IVQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLRMATVRAWNHFG............................................ 329
5 -13.400IDP00067 gene: ruvB; holliday junction DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] NT01CJ1369 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  6.........................................................................................................................................................EIEKYSFDETYETSLRPS-NFDGYI-GQESIKKNNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEG------------DILFIDEIHRL---SPAIEEVL--YPAMEDYRLDIIIGSGPAAQTIKMLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIRIASAKSYSALK............................................ 325
6 -13.100IDP06190 gene: ruvB; Holliday junction DNA helicase RuvB [Helicobacter pylori J99] NP_223085 [Helicobacter pylori J99]  ali follow..  16  7.........................................................................................................................................................NLETLDFETSQEVSLRPN-LWEDFI-GQEKIKSNQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTNLQAK------------DILFIDEIHRL--SPAIEEVL---YPAMEDFRLDIIIGSGPAAQTIK-LSNPLRDRF--GMSFRMQFYSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSMDLSITLHALNELGVNELGFDEADLAYLSLLANAQGIAASMREDEGTIEDVIEPFLLANGYLRIATPKTHALLK............................................ 326
7 -11.400IDP92574 cell division cycle 48 protein [Toxoplasma gondii] ACU32853 [Toxoplasma gondii]  ali follow..  15  242...........................................................................................................................................................................................................VLLYGPPGSGKTLIAKAVANET-----GAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKNAPIIFIDEIDSIAPKRRVVSQLLTLMDGLKGRGQVVVIGATNRQNSIDPALRR--GRFD--REIDIGVPDDNGRLEILRIHTRNMKLANDVKLEELAANTHGFVGADLAQLCTEAALSCVLNSMAVTQEHFTSALQCCNPSSLRETVVLEDVKRNLQEMILYPIDHFYGPPGCGKTLLAKAVASECSANFVSIKGPELTMWFGESEANVREVFDKARAASPC---FFDELDSIGTQRGNSLGD 593
8 -10.900IDP02738 gene: hflB; ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] FTT1310c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  146........................................................................................................................................................................EIKVTLDD-VAG-----VDEAKEEVAEIVDFLREPVLMVGPPGTGKTLLARAIAGEA-----KVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKKAPLVFIDEIDAVGRHRGSNDEREQTLNQMFADNEGVIVIAATNRPDV--LDRALLGRFDRQVTVGL--PTVKGREAILKVHMKKVALGEDVRADWIARGTPGFSGAELANLVNEAALFAARESKDVSMADFEKAKDKILMGSERRSMAMTEKEKRLTAYHEAGHAII-HDPVYKVSIIPRGRALQSRLVLRGRLCSILG---GRIAEELIFGYDHVTTGASNDIQVATDI............. 499
9 -10.900IDP02184 gene: ftsH; ATP-dependent metalloprotease FtsH [Coxiella burnetii RSA 493] CBU_1352 [Coxiella burnetii RSA 493]  ali follow..  15  150........................................................................................................................................................................QVKVTFDD-VAG-----VDEAKEEVKELVEFLRDPVLLVGPPGTGKTLLAKAVAGEA-----KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPIIFIDEIDAVGRHRGAHDEREQTLNQLFEGKEGIIVMAATNRPDV--LDPALLGRFDRQVVVPL--PDIKGREYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARENKKVSMSEFERAKDKIMMGAERRSMVMSDDEKKLTAYHEAGHAIV-HDPVYKVTIIPRGRALMTKRRLECQLAGLFG---GRIAEEIIFGPDLVTTGASNDIEKATEI............. 503
10 -10.900IDP02605 gene: hflB; ATP-dependent metalloprotease [Yersinia pestis CO92] YPO3502 [Yersinia pestis CO92]  ali follow..  15  146........................................................................................................................................................................QIKTSFAD-VAG-----CDEAKEEVSELVDYLREPVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPIIFIDEIDAVGRQRGAHDEREQTLNQMFEGNEGIIVIAATNRPDV--LDPALLGRFDRQVVVGL--PDVRGREQILKVHMRRVPLDTDIDASVIARGTPGFSGADLANLVNEAALFAARGNKRVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAII-HDPVHKVTIIPRGRALASRQKLESQISTLYG---GRLAEEIIYGPEKVSTGASNDIKVATSI............. 499
11 -10.400IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]  ali follow..  14  6.......................................................................................................................................................................LARKWRPQTFVVGQEH-VLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKGLQEIEQGRFVDLIEIDAASRTKVEDTRE-DNVQYAPARGRFKVYLIDEVHMLSR---------HSFNAL-------LKTLEEPPAHVQKLPVTILSRCL-----HLKALDVEQIRAQLEKVLLAEQITSDARALQLLARAADGSMRDALSLTDQAVSMGQVTTVTVDDEQPLAIIEALVSADGARVMAQIEQAASRGVDWENLLVESLSLLHKIAMVQLLPSMLDNHYAAIEPRLRELARTLPPAYQTLLVGRKELAYAPDRRMGVEMTLLRALA........ 358
12 -9.770IDP91903 hypothetical protein SpneCM_05798 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005798 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  16  181........................................................................................................................................................................DIKVRFSD-VAG-----AEEEKQELVEVVEFLKDPVLLEGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPIIFIDEIDAVGRQRGVNDEREQTLNQLFEGNEGIIVIAATNRSDV--LDPALLGRFDRKVLVGR--PDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIV-ARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIVQTTGASNDFEQATQMARAMVTE 539
13 -9.750IDP90616 DNA polymerase III subunits gamma and tau [Vibrio cholerae O1 biovar eltor str. N16961] VC1054 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  6.......................................................................................................................................................................LARKWRPTRFVVGQSH-VLTALENALAQ--NRLHHAYLFSGTRGVGKTTIGRLFAKGLQEIDQGRFVDLLEIDAASRTKVEDTRE-QYKPARGRFK---VYLIDEVHMLSR---------HSFNAL-------LKTLEEPPEYVQKLPVTILSRCL-----HLKPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGN------------------------GVVKSDIVAHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWD---LQQLSTQLHRIAM--YQALPATLDKSLPEASRIESLAKTLAPQD.. 323
14 -9.550IDP91667 POLG_CXB3W [Coxsackievirus B3 (strain Woodruff)]  ali follow..  11 1202......................................................................................................................................................................................FSLEKKMSNYIQFKSKCRIEPLLLHGSPGAGKSVATNLIGRSLAEKLNSSVYSLPPDPDHFDG----------------YKQQAVVIMDDL----CQKPDGKDVSLFCQ---------MVSSVDFVPPMAALEEK--ILFTSPFVLSINAPTVSDSRALARRFHFDMNIEVISMYS-------QNGKINMPMSVKTCDEECCPVNFKKCCPLVCGKAIQFIDRRTQVRYSLDMLVTEMFREYNHRHS.............................................................................. 1419
15 -9.390IDP02742 hypothetical protein GBAA2122 [Bacillus anthracis str. `Ames Ancestor`] GBAA2122 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  17............................................................................................................................................................................NIEKLMVGKRKETILALTALLAEG-------VLLEDVPGVGKTMLVRALSKSIDADYKRI--------QFTPDLLPSIYNPKELQFEFKPGPINFILADEINRTSPKESMEEGNITIDGMTRPLPKPFFVMATQNPVEYEGLPEAQLDRF---LKLKMGYPTPEEELLYLQQSVR--EVSMDKGIKHYIVKLVSQSPRGSIALMKASQAYAFIHGRNVIPDDVKFLAPYVLAEAKFEGITGEQVISKIVARTTVPTQRKMN.......................................................................... 295
16 -9.270IDP91668 Q914E0_9ENTO [Echovirus E7]  ali follow..  14 1211......................................................................................................................................................................................FSLEKKMSNYIQFKSKCRIEPLLLHGSPGAGKSVATNLIGRSLAEKLNSSVYSLPPDPDHFDG----------------YKQQAVVIMDDL----CQNPDGKDVSLFCQ---------MVSSVDFVPPMAALEEK--ILFTSPFVLSINAPTVSDSRALARRFHFDMNIEVISMYSQ.................................................................................................................................................... 1365
17 -9.240IDP01335 gene: clpA; ATP-dependent Clp protease ATP-binding subunit VC1144 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  191.................................................................................................................................................................................LIGRDKELERTIQVLCRRRKN---NPLLV-GEAGVGKTAIAEGLAWRIVEGNQRSVIYSLD----IGSLLAGTKYRG--DFEKRFKSI-ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSIGSTTYQEYSNIFEKERALSRRFQ---KIDIVEPSLDDTTKILMGLKAHHDVRYTNKALRAAVELSAKYINE-----------RHLPDKAIDVDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQ--DAAIDVLTEAIKLTRAGLGAEHKPVGSFL....................... 495
18 -9.060IDP00151 gene: mshM; MSHA biogenesis protein MshM VC0403 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  14......................................................................................................................................................................HLTPDTEL--LGLAPHFEAIQTLSAAIEMGEG-----SKLTGEVGTGKTMVCRML---LTHLGDEVALIYLPNPMLSEELRQAVAAELQLDVASPVRVVEVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIGQ-AQHHLRQFRQRITFNAN---LRPLTQAETEVYIESRLQKAQAPYPLFNATLKKAVWRASQGIPRLINQICHKALLLAWHEQSPVNQHHLFAAIHDTYDSCKPR.................................................................................................. 269

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.