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Query: gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIRVGTDRAVISTIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLPLast
1 -101.000IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]  ali follow..  25  1MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---------EQLRPWDKELIPLAEQISTWRAEYSAGIAADMDDTCKQFLPE-FSLTFSFQRGWEK--------------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRSGRRCLYLIDDFASELDDERRGLLASRLKAQSQVFVSAISAEHVIDMSNSKMFTVEKGKITD........ 357
2 -13.200IDP04036 gene: smc; chromosome segregation protein SMC [Clostridium perfringens ATCC 13124] CPF_1970 [Clostridium perfringens ATCC 13124]  ali follow..  20  1MFLKSLEIRGFKSFDKTELNFKKGITAIVGPNGSGKSNVSDSVRWVQSAKTLRGAKMEDVIFTGTEYAQVSLTLDNSLGDVKVTRKLFRSGESEYLINNSPC-RLKDVVNLFMDTGIGKEGYSLIGQGPEDRRAILEEAAG---------IVKFKS---RKGEAEKK---------------LKNTEENLVRINDIIFTYEER-LGPLEEEKNKAYLELSNELKHKEISS........................................................................................................................................................... 229
3 -13.200IDP00797 chromosome segregation SMC protein, putative SACOL1250 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  2VYLKSIDAIGFKSFDQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVQSAKSLRGSKMEDIIFSGAEYAEVQLRLDNHSKEVIVTRRLYRSGESEYYINNDRA-RLKDIADLFLDSGLGKEAYSIISQGPIDRRQIIEESAG---------VLKYKK---RKAESLNK---------------LDQTEDNLTRVEDILYDLEGR-VEPLKEEAAIAYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLE............................................................................ 309
4 -10.200IDP92724 gene: msrSA; MsrSA [Staphylococcus aureus] BAA88415 [Staphylococcus aureus]  ali follow..  21.............LNIDHLYAYQFEKILIGGNGTGKTTLLNMIAQKTKPESGTVETNGEIQYFEQLNMDVENDFNT-----SLMSELHIPMHTTDSMSGGEKAKYK-----LANVISNYSPI-LLLDEPTNHRALIDQIADTI-RVFKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKAKRNQAQQMAQASSKQKNKSIAPDRLSASKQKGTVEKAAQKQRMEHLEEVEKPQSYHEFNFPQNKIYDIHNNYPIIAQNLTLVKGSQKL----TQVRFQIPGKNIALVGANGVGKTTLLEAKLSLAVLFSTKAN--MLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKKWELTGQSIHD........ 486
5 -9.990IDP92723 ABC transporter ATP-binding protein [Streptococcus pneumoniae TCH8431/19A] YP_003725655 [Streptococcus pneumoniae TCH8431/19A]  ali follow..  13  20.............LDINELEVYDYDRILVGANGAGKSTLLRVLLGELTPPGCKMNRLGELAYIPQL----DEVTLQEEKDFALVGKLGVEQLNIQTMSGGEETRLK-----IAQALSAQVHG-ILADEPTSHRYFLDEIVDKI-TEYWGNYSDYKKMYNAAKTLEHRIAALGKVEAPEGIRRIRFRQSKALELHNPYPIVKVALTGGNGIGKTTLIQMILNHEEGISISPKAKIGYFAQNGYKYNSNQNVMEFMQKD-CDYNISEIRSVLASMGFKQNDIGKSLSVL------SGGEIIKLLLAKMLMG--------RYNILIMDEPSNFLDIPSLEALEILMKEYTGTIVFITHDKRLLENVADVVYEIRDKKIN......... 484
6 -9.230IDP02426 ABC transporter, ATP-binding protein [Coxiella burnetii RSA 493] CBU_1952 [Coxiella burnetii RSA 493]  ali follow..  18  17.............IEKINFSIFEKHRVIVGSNGCGKTSLFEVISLAQEVRASSVSAIHYAISGDTELSRVMEKLNEAEQKEDYETVMECHNKLHALDGYSAEARAAKILNSLAKCLFTPSDL-LLLDEPTNHRDFLDNTVTHI-KLYTGNYSSFEMERAQRIALQNAQYKKQQMQIAHMMKFVDRFRAKASK--AKQAQSRLRAIEKMEII-STLIKGLRGEPSQLVIGYFAQ-HQVDYLPLEGSPLSLLSRENSERENSESEGKLIAYLGSFGFNRDQSLSPVKQF------SGGEKARIALALIIWR--------RPNLLLLDEPTNHLDLEVRQALAFALQEYEGALLLVSHDRHLMRTLVNELYLVEGGTVKT........ 511
7 -9.200IDP00065 macrolide efflux pump, putative BA_5409 [Bacillus anthracis str. Ames]  ali follow..  11  19.............FTLPSLEIQAQDRIIVGVNGAGKSTLLQILSKEIEADKGIVTHHSSISIIPQISEELPKVASS------TAKGKWNISNISNSMSGGERMRLK-----IAHALEQDAGI-LFADEPTSHREFLDNICTKIYEQYINEKERLEKSILQKKQRASSMTKIPTRFSSSESKLYKLSGANGQEQVSKAAKALETRLEKLEKK-TTLFNMLLANERGIQLSKSCKIGYFEQTLSILKTDKTILENVLEE-TNYTESFVRTILARLLFRREDVHKPVHVL------SGGERMKVALAKVFLG--------NYNMLLLDEPTNYLDLATQEELESMLQEYPGTILFISHDRAFIRSVADHILQVDESEPRV........ 476
8 -9.120IDP01470 ABC transporter, ATP-binding protein VC2608 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  43.............LEQASATIHPGDKVLVGKNGCGKSTLFALLWVAQETPALDRTALEYVIDGDREYRELERQLMDAEAADNGTKVADLHGKIEMVGGYSIRARASELLDNLAQALICRSDL-LLLDEPTNHRDFLDPIVNRI-NEYTGNYSSFETQRAQKMLQQQAIYQKQQKQMAHMQSYIDRFRYKASK--ARQAQSRIKALERMSTLIKLLSGELKPQSGDCTYSQGVKIGYFAQHQLETLHPETPLQHMMQIAPDKNELELRNYLGSFGFHGEKALEKVAPF------SGGEKARLVLALIVWQ--------KPNLLLLDEPTNHLDLDMRQALTLALQSYEGAMVIVSHDRYLLRATTDDLYLVHDHQVG......... 532
9 -8.770IDP02259 ABC transporter ATP-binding protein [Bacillus anthracis str. `Ames Ancestor`] GBAA2164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1..MKMLTVENLSKFDGLSFSIAEGQRAIIGVNGTGKSTLLKII---LTVLEQVFHGDTPLIRLLRDYEKALLHIEKDPSNEKVQEQLFAVQQRMDAMSVWEAATVGNLSGAMAQCFIETPDL-LILDEPTNHRYFLDRVTNRINGKLYSYEGNYSTFLEAKALREEQELAQESKRQNLYRRELA-WIRRGAKARSTKQKARIQRFEELKGQEGP------AAKQSVDIALSGSRLGKKVLELKDVTKKFGDKTVLNNFNHIVKPGDRIG--IIGANKSSLLNMLAGKISPDSGSGGERRRLYLLRILMG--------EPNVLLLDEPTNDLDPQTLTVLEDYLEDFSGVVLTVSHDRYFLDKVVDELFIFTEGEVRE........ 518
10 -8.720IDP00487 ABC transporter ATP-binding protein YPO1491 [Yersinia pestis CO92]  ali follow..  13  17.............FENISVKFGGGNRYLIGANGCGKSTFMKIL--VFLDPNERLGKLRQDQFAFENNTVLDTVIMGHGELWEVKEERDRIYAMAEMSEEQHYGLMSEIAPLLAQALFSDPEI-LLLDEPTNNRHFLNMVCTHM-RVYPGNYDEYMTAATQARERLLSDNAKKKAQISELQSFVSRFSANASK--SKQATSRARQIDKISTLLKTLLGEYESDAGTVKWSENSKIGYYAQDHASDFDIDLTVFDWMSQWKQEKDDEQAVRSVLGR-SQDDIKKKVSVL------SGGEKGRMLFGKLMMQ--------RPNILVMDEPTNHLDMESIESLNMALEMYEGTLIFVSHDREFVSSLATRVIEMTPNKLI......... 514

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.