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Query: gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYGLast
1 -42.200IDP90373 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_191 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  14  2...................................................SFYPQNLPSFRRRKPSRTDSPIKHAKHFLRDHLSHLRKILAGKPQEVIEAWYEILGKKYNGMTQAIGLKDGILSIKVRNASLYAVLKSSQKELISRIHSAVPGAKVKEIRFLLG...................... 116
2 -8.820IDP06117 hypothetical protein jhp0759 [Helicobacter pylori J99] NP_223477 [Helicobacter pylori J99]  ali follow..  10  3............................................................................QNIFSLLIQKKSYK-KLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGH................................. 79
3 -5.990IDP91880 hypothetical protein lmo0753 [Listeria monocytogenes EGD-e] NP_464280 [Listeria monocytogenes EGD-e]  ali follow..  14  127.............................................................................QLLVNLLKSVTRKFEYIGEKVRMVSEDSVRAKISNYLFGIQDDDGSIELTETREEIADYLDITRPSLSRELGRMQKENIIR............................. 207
4 -5.410IDP91839 gene: mutR; positive transcriptional regulator [Streptococcus pyogenes NZ131] Spy49_0415 [Streptococcus pyogenes NZ131]  ali follow..  18  3.........................................................................KELGKTLRRLRKGKQVSIS-------------LADEYLSKSQISRFERGESEITCSR------------NLLDKLNITIDE................................. 61
5 -5.360IDP91840 positive regulator [Streptococcus pyogenes NZ131] Spy49_0449c [Streptococcus pyogenes NZ131]  ali follow..  15  3.........................................................................SKLGATLRKVRKGKQISLC-------------VADEHLSKSQISRFERGESEISCIR------------NILDKLHITLDE................................. 61
6 -5.350IDP91845 gene: mutR; putative positive transcriptional regulator MutR [Streptococcus pneumoniae R6] spr0960 [Streptococcus pneumoniae R6]  ali follow..  15  3.........................................................................SKLGVTLRKIRKGKQISLC-------------VADEHLSKSQISRFERGESEISCIR------------NILDKLHITLDE................................. 61
7 -5.320IDP91844 Rgg/GadR/MutR family transcriptional regulator [Streptococcus agalactiae A909] SAK_1520 [Streptococcus agalactiae A909]  ali follow..  16  3.........................................................................KELGKTLRRLRKGKKVSIS-------------LADEHLSKSQISRFERGESEITCSR------------NILDKLNITIDE................................. 61
8 -5.000IDP91853 transcriptional regulator [Streptococcus equi subsp. zooepidemicus] SZO_17730 [Streptococcus equi subsp. zooepidemicus]  ali follow..  11  2.........................................................................KNFGEIFKKFRESRGLKLK-------------VAKAGISTSQLSRFEKGETDLTISK------------LILDEINMPIDE................................. 60
9 -5.000IDP91842 positive transcriptional regulator MutRfamily [Streptococcus pneumoniae G54] SPG_1268 [Streptococcus pneumoniae G54]  ali follow..  15  1.........................................................................MILGETYRKIREEKGISIS-------------LAGAEISKSQISRFELGETEISVFK------------YLLERIGVTLEE................................. 59
10 -4.950IDP91848 XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] STER_1530 [Streptococcus thermophilus LMD-9]  ali follow..  13  2.........................................................................KEFGAIFKKFRKSRGIRLK-------------VAKAGISTSQLSRFEKGQTDLTITK------------LILDEINMPIDE................................. 60

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.