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Query: gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRSLast
1 -6.430IDP90283 gene: GRA6; granule antigen protein GRA6 [Toxoplasma gondii] TGME49_075440 [Toxoplasma gondii]  ali follow..  25  49......VRQTPSETGSSGGQQEAVGTTEDYVNSSAMGGGQGDSLAEDDANEGKSEARGPSLEERIE--EQGTRRRYSSVQEPQAKVPS-------KRTQKRHRLIGAVVLAVSVAM-LTAFFLRRRRSPQEPS............ 183
2 -5.120IDP01134 intracellular serine protease BA_2001 [Bacillus anthracis str. Ames]  ali follow..  11  137..............IIEAIHYAVNWRGPNKERVRVISMSLGGPQDVPELHEAIQNAVKQDVLVVCAAGNNGDCNDNTEELDFPGAYSEVIEVGAVNLERKIACFSNSNQEIDLVAPGDEILSTYPEGK---TSMATPHV...... 264
3 -5.100IDP91542 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_080410 [Toxoplasma gondii ME49]  ali follow..  18  2.................AAESSPSGPIE--------SAGLAASPTRSSTSSLDPDQQTCEHASSLPSLRESVASKAGEGPRLLTFLPQRLHEATPPQ------------DGALPAASGHGHTDAETHAQGAPGEARPEIQAGPDS 122
4 -5.070IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  94.................................................................QPKNAATKKEVAKPAVQGEKLPNTASNNVA--------MMALSAC--LVGIGTLFGLKRRNKVK................ 147
5 -5.020IDP91902 phosphate ABC transporter, permease protein PstA [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007650 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  57.................GIGIQLYNSFFLLVITLIISVPLSMGAG---------------IYLAEYAKKGPVTNFVRTCIEILSSLPSVVVGLFGYLIFVVQFEYGFSIISGALALTVFNLPQMTRNVEDSLKHVHHTQR..... 164
6 -4.960IDP01887 gene: spo0J; stage 0 sporulation protein J [Bacillus anthracis str. `Ames Ancestor`] GBAA5729 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  47.......EIVAGERRYRAAKEAGLEKVPALNEQQMMEFALLENLQREDLNPMEEAMAYQMLMNELNVTQEQLAKCLGKSRPYIANYTRLLSLPSFVQDMIANGQLSMAHGRTLLT.............................. 158
7 -4.910IDP91784 gene: ermA; rRNA methylase Erm(A) [Staphylococcus aureus subsp. aureus N315] SA1480 [Staphylococcus aureus subsp. aureus N315]  ali follow..  3...QKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKKIYGNIPYNISTDFESQAKYSYLIVEKGFAKRLQNLQRMLKKVPPLYFHPKPSVDSVLIVLERHQ 180
8 -4.910IDP91589 gene: ermA; rRNA methylase [Staphylococcus aureus subsp. aureus N315] BAB41266 [Staphylococcus aureus subsp. aureus N315]  ali follow..  3...QKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNPSENIKKIYGNIPYNISTDFESQAKYSYLIVEKGFAKRLQNLQRMLKKVPPLYFHPKPSVDSVLIVLERHQ 180
9 -4.830IDP00457 hypothetical protein YPO0570 YPO0570 [Yersinia pestis CO92]  ali follow..  14  40.........................................................RAKAESALKDTRVRLSETSDKIAAQTKEIADKADN-------HDNPWTGVGIGAAV---GVVLGVLLSR................... 100
10 -4.780IDP02732 gene: ksgA; dimethyladenosine transferase [Coxiella burnetii RSA 493] CBU_1982 [Coxiella burnetii RSA 493]  ali follow..  14  1........MPMRKRFGQFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITRVVGNLPYNISTP--QKEVVRRITAEVGVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRLIPRH 188

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.