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Query: gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRLTHPTPCPENGETMIDRRRSAWRFSVPLVCLLAGLLLAATHGVSGGTEIRRSDAPRLVDLVRRAQASVNRLATEREALTTRIDSVHGRSVDTALAAMQRRSAKLAGVAAMNPVHGPGLVVTLQDAQRDANGRFPRDASPDDLVVHQQDIEAVLNALWNAGAEAIQMQDQRIIAMSIARCVGNTLLLNGRTYSPPYTIAAIGDAAAMQAALAAAPLVTLYKQYVVRFGLGYCEEVHPDLQIVGYADPVRMHFAQPAGPLDYLast
1 -70.300IDP05645 hypothetical protein CD3297 [Clostridium difficile 630] CD3297 [Peptoclostridium difficile 630]  ali follow..  15  2.....................KKQYVFIILASTILGILVGTIFRDYSNEEVYTSKDKSIRKEIKMTRKSIKELTKEKDKLDKEINSMKQ---NQKNSEEISEIETLRDSLSYSDVKGSGIILSIDAIDEK-------TGNIANSIDYNKILVKVINELKVNGGKYIEINGQRINQYSEVVLAGSHININGVPVAQPYEIKCIGDKEKLSNYVDKGSKY--LDSIQTNYPMKISIKTEENISMKKMNIPNKLKYIKG...... 225
2 -7.890IDP04251 gene: virS; sensor histidine kinase VirS [Clostridium perfringens ATCC 13124] CPF_1751 [Clostridium perfringens ATCC 13124]  ali follow..  11  196.........................FFVSILLLLSNMSLMFIVSKIIKNNKLKLENEFIKDKLEMEYKYYSNLKDNQEKVKRLYHDIKNKETGIRKKYIDSLNSEIDKLNLGFNTGNEVLDVILNNKREKCMENN-FIDFSKVNFIEYFDICTIFSNCIDNAIEACK-DNNRYISLK-GNCVNNFYVIK---IENSKTNKIKKLNGDFLTDKKDKFGLKNIRLALEKYNGEIIIEPLDDMLIP................... 433
3 -7.290IDP04201 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0499 [Clostridium perfringens ATCC 13124]  ali follow..  10  189.........................NISTISIAVNLAIIHFITYKRFKEYKANSQINILEKQLDYQKNYYEKVINNYGEARKALHDMNNKDYKNMDDYIQSLSERIVTNKDNNICSNKVINAICLDKCERCKKEG-DTIINKKLKIDDLDLCIVLGNLIDNAIEACE-EIQKVIQVS-ARIYLNQIYIK---VINSKNNKVEKRNNKFLTSKKDKKGLENVKEAVHKNHGDIEIKDSKNLYMKC.................. 431
4 -6.710IDP02453 gene: maA; maltose O-acetyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA3402 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  91......................................................................................................LDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNN------------GGGAIINPGVSIGDNAVI--SGAVVTKD------PNNVVVGGNPAKVIKTIE................................................. 186
5 -6.620IDP01515 hexapeptide-repeat containing-acetyltransferase VCA0836 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  89......................................................................................................LDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDD------------GGNVVINQGVTIGARSVV--ANSVVNQD------PPDTLVGGTPARILRSLKDPA.............................................. 187
6 -6.590IDP95125 pullulanase-specific type II secretion system component M [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917864 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  12..................TPSEQRLLLGLTGLLAACAFWYGLWQPWRA------REAQWRQTLVKEQASLRWMTEQAPRLQQLSQQPAPAAKEALTALVMREAASHGLTVVRLQPQGKRLQITLQPCAFQVLIDWLDAPAMRGVNAISLSVTGQPSRPGWVTVNHLLLERDD.......................................................................................... 159
7 -6.560IDP04303 gene: lacA; galactoside O-acetyltransferase [Clostridium perfringens ATCC 13124] CPF_0251 [Clostridium perfringens ATCC 13124]  ali follow..  1........................................MDLKEIRERMYGQKLYYCNDEDLMREQMKALELLYDFNKTRPSEQDKREKILKKMFAEIGDDVDDCDIFVGNNVMFGPNVTVSAGTHPIHPELRSKQAQYNIPIHIGNN------------GANSVILPGVNIGDNSVI--AGSIVTKD------PSNVVAVGNPCRVLREINEND.............................................. 191
8 -6.520IDP05262 gene: maa; maltose O-acetyltransferase [Clostridium difficile 630] CD0872 [Peptoclostridium difficile 630]  ali follow..  12  89......................................................................................................LDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDN------------GGGVIITPGITIGDNVVI--AGSVVTKD------PPNTVAVGNPCRVIKKIE................................................. 184
9 -6.380IDP93824 general secretion pathway protein M [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007733 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  12..................SKREQLIFSLGGLVLLGLIVSQGIVAPLEN------YQHQSTQNLHSAQRDFAALLQQQERISRLQAQRPPQYALSADRALHESAHQKNMTITLLEANANRAVVAPLTLPFSQLLSWLEQLEAQYGLASQLKLVADVDNLQRAETTTL................................................................................................ 164
10 -6.300IDP00698 galactoside O-acetyltransferase SACOL2570 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  90......................................................................................................MDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSN------------GGHVAVLPGVTIGEGSVI--AGSVVTKD------PPHSLAVGNPCKVVRKIDNDL.............................................. 188

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.