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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -15.200IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  12  49...........ALSFNPTTWIAFSFVFALGCYQLASQQYLRYSKLTIGLFVSCLILTVPLFYANSHYMQ---------SVSRLVGLWAGFGFFVLLQQFSFSNKYKQRLLWLVVLAVVIESFIGYYYDTLSNRPYGI-----------QPNVMASLATGLIISGYLLARQPHKYNKHL---------SEITLLYLIPLLTVPLIVVLASRTGWLAAMIATLLLLPYLYRFGTKIRFWGWLGSIILGLSLSGATNLESARAYTF--------------PQALDMLIEKPFTGYGYGNFESAYMDHPHNELL---WGVEGGLVPLLGIFLAAILVLNRIYSAKKGT-----RLAMFALFVPIVLHSQLE--------------YPF--YHSAAHWLIFIILIYWVDQRVAKVKSVN.................... 433
2 -12.000IDP00229 putative O-antigen biosynthesis protein YPO0417 [Yersinia pestis CO92]  ali follow..  13  19SIAALLLGISMPTNNQLMSVSLVLIIISLIINRKSLDFKPLLTSPLVYLPAAMFVLLALSLLYQNNSYGP-----------DMVGKYKKLLYILPLALFFMNQPRLIKLFCTGFLVANAVILAGSLAVGVLHIPLSGVDPTNPTIFKLQITQNFFMALAALLWLVLAFQHQG--------------WKRWGYSVLVVAASYSILFLVLG---TGYVALIVGLGVWLFFSLGNRQRLTLVVLGALAFAALIFIPNKATDRIVQGVD--ACNSSMGQRSAEAARLIKESPILGHGAGGFYYENVNNPHNQYLLETI--QSGVIG----LFLFLAWVICCYRVIWQQTPALRNVLLAVLTSYM----------------ACNFFNSFLLDSSEGHLF-MIFVAVLAGYSVSGSQSIAGKRLPT.............. 410
3 -11.700IDP04380 gene: rfaL; O-antigen ligase [Salmonella typhimurium LT2] STM3713_1_404 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  39...............HLIIILMVITAIYQVSRSPKSFPPLFKNSVFYSVAVLSLILVYSILISPDMKES---------FKEFENTVLEGFLLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIWLFRKNAIKLV-----------------FLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAIIGALVITQHNNKPDPEHLLYKLQQTDSSYRY----TAWILIQENPIKGYGYGNDVYDGV-GPHNTIL---IWFSAGILGLASLVYLYGAIIRETASSTLRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQIGIIT-------------GFLLALRNR.............................. 404
4 -10.400IDP95152 mucoviscosity-associated protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920361 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  11  48................VLGPLICFVTIFSKVILKDKVSLVRFKFADGIIFGFFLLYILSAFFSNDLVIG----------LEFSLRYLFLGASFYFFARFSYVLYLDKGKFINDYMHGILITGFIVAVTALMQNNSSSQYTMRLTVGDSSTIPLAILGQAAVVNVYYIMTQKGKKS----------------IPYLISFLPIVYAFLAANTRSVVIGFILALLLLLSSDKFSIVRKNFGKVLLAISGMAVFIGYQSESERIDAW--------------HHAIATFYEHPILGEGVGIFIQRFNMYPHNIFF---SAAETGIVGILLTVVLIGSCFYSIITNKGDVKTPVVAAMFIFLFFVSLV........................................................................ 377
5 -5.330IDP04712 putative OmpA-family membrane protein [Yersinia pestis CO92] YPO0514 [Yersinia pestis CO92]  ali follow..  10  144.............................................YIAAAMPL----LLLVENIRSWPTRNAAE----VRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYIDGIFNGL-SLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLEHGAVLLMDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIKALKIFTYGFALCLCAYGVTAWYLHQQSQQIRSNILTWVLPEPRKINIMETLPNPLSNILNEGWLEVRKDPRLLIFTSDGAFRTGEATLSEEFINKKNIERLGLALAPWPGDIGHTDNKPFRSTSGNNNLKLSARASVVADKLRESTQINETHQREISAIG--------RGESDPLADNATEEGRKRNRRVDILWKIGQRDADKAMKQFLENPTPEVQGTNTQQ.. 536
6 -4.810IDP00181 putative membrane transport protein YPO0363 [Yersinia pestis CO92]  ali follow..  13  612..........RFYRLSVWLIVPLMMALITFENYNDREFAGTLGRLCFILLCIALSLVTNSLKRAGIPLYLDKKGSGENMINVALWGLLLSAPLIAALASALGYLTTSQALLARLETSVAIWFFLLVVYHI------IRHWMLIQRRRIAFDRAKQRRADILAQRARGEEDSPHSNSTEGSIDVEEPIILRLVRSILTMIALVSVIVLWSEIHSAFGFLENIRLWDVSSTINGIESVQPITMGSLLIAVLVLIITAQLVRNLALLQHLDLTPGTGYAISTGLLGFSLLGILGLGLGFGLQEIFPIRIGDTV--TIRDLTGSVTKINTIIVPNKAFITEQFINWSLSDSITRVAPAETSSEEVTNVLMTAAQRCTLVPPPEV---LVDLQQGIQIFEL...................................... 1056
7 -4.690IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  11  313.........................................................................DVMIIFLREGLEVLL-IVMTLTTMTRNVKDKKGTASVIGGAIAGLVLSIILAITFVETLGNSGILRESMEAGLGI-----VAVILMFIVGVWMHKRSNAKR---NDMIKNMYANAISNGNLVLLATIGLISVLRE---GVEVIIFYMGMIG----ELATKDFIIGIALAIVILIIFALLFRFIVKLI---------PIFYIFRVLSIFIFIMGFKMLGVSIQK-LLGAMPRHVIEGFPTI--NWLGFYPSYEPLIAQGAYIM................................................................................................... 549
8 -4.690IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  13  65..........................................................MEIRPLKEKEENLVNSLVTAGHGQIDNFSLGVLGMALFLEEMLRTRVGTKHAILLVAVSFVTLIMVMVGATMTDDIGMGVTYLALAAFKVRPTFAAGLLLMTTIGIVLLSQSTI-----------------TILELTDALALGMMVLKMVRKMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVVSVSPLFLTSSQQK------------------------------------------------ADWIPLALTIKGLNPTAIFLTTLSRTNKKRSWPLNEA------IMAVGMVSILASSLLKNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAADV................................ 361
9 -4.660IDP90291 high mobility group (HMG) box domain-containing protein [Toxoplasma gondii ME49] TGME49_081900 [Toxoplasma gondii ME49]  ali follow..  11  427...............................................................................................................................................................................................................................................................................FDGVYTQKSTLGRKA----GLGLFCERPEGLHK--GQIITEFVGWLVD--------ASHIVAVQKGFLYIDGAKEPGGSFANDGSEFLVFLRATADI---------NGEEI-FVPYHKTENCPDAFKQRKLEQLRRRYKNPEFVHIPHREEVAMREREEAER. 613
10 -4.500IDP91345 transposase [Vibrio vulnificus CMCP6] VV1_3181 [Vibrio vulnificus CMCP6]  ali follow..  7  1.....................................................................................................................................................................................................................................................................................MNVADQIVSFEFSSI--KASMAWKAQLEVNAVLTALLALSLGYQRSRWRTEPMAIEVNRIFGFNAHSSTIRRWVPKLGIV............................................................................. 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.