current user: public
If you have questions about the server, please let us know.

Query: gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MQGLVLQLTRAGFLMLLWVFIWSVLRILKTDIYAPTGAVMMRRGLALRGTLLGARQRRHAARYLVVTEGALTGARITLSEQPVLIGRADDSTLVLTDDYASTRHARLSMRGSEWYVEDLGSTNGTYLDRAKVTTAVRVPIGTPVRIGKTAIELRPLast
1 -31.000IDP92663 hypothetical protein BB0811 [Bordetella bronchiseptica RB50] NP_887360 [Bordetella bronchiseptica RB50]  ali follow..  17  2..............................................................MLTLIEPGASARRADFHAPGGTLGRDAENCLALPAAPLCRVQAALRADAQGWRLHNLSGMAAVHINDAALAAVRAIQAGDTLRVGAHTLEVS. 101
2 -26.900IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92]  ali follow..  15  4..............................................................VCRFYQGKHRGVEVELPHGRCVFGSDPQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSA--EPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVA 95
3 -25.800IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  17  2...........................................................QQWKIRILSGVHSGVEVTLPEGALVLGSDDIADLVLSDAGVEANHFTLVCDSESVMLRGCQDVTINGENRAVGESGIELERHAVISVGVVKFALGY 98
4 -6.590IDP93829 cellulose synthase regulator protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001008214 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  1........MMTRKITWFTALALGLAPFTHAETPAVPSLQSAASTTAVAATVDLAPVAPAALPNVPVRDVTYTFAKIAPPPGTFALGTHPEGVIEFSDEVVTNAMLNLEFTPSPSLIPVESQVNDELMGVTAITKEFQLPIDPLYISDFNRLRLV. 161
5 -6.400IDP90326 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_351 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  9  1........MKRFFPLFIGVLL-----------AHTLPSEGLSHQQAVQKKISYLSHFKGITGIMDVEDGVLIHDDLRLQANKAYVENRTDCGIKI----VAHGNVMVNYRGKILICDYEDTDSCLLTNGRCSLYPWFIG-GSTITISPSSIIIH. 135
6 -6.060IDP93890 adhesin [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005760 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  18  3MKKFVKKPLAIAVLMLASGGMVNMVHAEPTVINS-----------------------KDISATKTVKEGGSFSVEFKATENEIVSGKLDADTLVMSD---SGEH-------KGWNVRPTGASEGGQMGSERVEATFFLAAGDEVKAGEYQFTGR. 153
7 -5.910IDP06051 gene: hlyA; hemolysin [Helicobacter pylori J99] NP_223058 [Helicobacter pylori J99]  ali follow..  14  14........................................................NSREKAKALVLKKQVLVNKMVVSKPSFIVKEGDQIELIAPNLFVSRAGEKLGAFLEDHFIDDVGASKGGFSQ-------VALLKGAKVDVGKMQLDES. 115
8 -5.880IDP01368 transferase, hexapeptide repeat family VC0238 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  71........................................................................GENCVIGENCFLSCRESGTKLVIGKECMFSRNVKLMTSDG----------HDILRDGKRINPAKSIYIGSHVWLADNVTILK. 142
9 -5.870IDP95173 pullulanase-specific type II secretion system component B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917878 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  16  126.................................................................VYASRPEKRSIVLNGKAWTEGDSPLPNLVVEQ--IQQDVTIFSFNGTTFTLAALEDWPGGKIDEEPKEE..................... 192
10 -5.850IDP05596 putative lipoprotein [Bacillus anthracis str. Ames] BA_3366 [Bacillus anthracis str. Ames]  ali follow..  18  206...........................................................................................DTVYKVLQRTGLDVDAMGSKDGIYVKDITATSG-RVNGAFPNGVVTVKPGDTIE.......... 272
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;