current user: public

If you have questions about the server, please let us know.

Query: gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .
# Score Template Links and tools%idFirst MGSQKRLVQRVERKLEQTVGDAFARIFGGSIVPQEVEALLRREAADGIQSLQGNRLLAPNEYIITLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGDVVVRFEQSSNLHTGQFRARGTVNPDVETHPPVIDCARPQSNHAFGAEPGVAPMSDNSSYRGGQGQGRPDEYYDDRYARPQEDPRGGPDPQGGSDPRGGYPPETGGYPPQPGYPRPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRGYPDQRGYQDQGRGYPDQGQGGYPPPYEQRPPVSPGPAAGYGAPGYDQGYRQSGGYGPSPGGGQPGYGGYGEYGRGPARHEEGSYVPSGPPGPPEQRPAYPDQGGYDQGYQQGATTYGRQDYGGGADYTRYTESPRVPGYAPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIVRMHLast
1 -24.600IDP92663 hypothetical protein BB0811 [Bordetella bronchiseptica RB50] NP_887360 [Bordetella bronchiseptica RB50]  ali follow..  22  14..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ASARRADFHAPGGTLGRDAENCLALPAAPLCRVQAALRADAQGWRLHNLSGMAAVHINDAALAVRAIQAGDTLRVGAHTLEVSG. 102
2 -13.400IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  1530...............................KKEKKEKKEKKEKKEKKKKKGGETA----------AEPEEASAVLAPPPVPVPAAAIPSVLLPADSEDGEKEQPKEKKKEKKEKKKKKDGETDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAE--------SSNESRTTAGAKLRQQQLD---LA-------GRT....... 1990
3 -11.200IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92]  ali follow..  19  13...........................................................................................................................................................................................................................................................................................................................................................................................................................................................RGVEVELPHGRCVFGSDLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSA--EPLLQEGLPVPLTLLRAGSCLEVGFLLWTF... 93
4 -10.200IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  24  14...........................................................................................................................................................................................................................................................................................................................................................................................................................................................SGVEVTLPEGALVLGSDFIADLVLSDAGVEANHFTLVCDSESVMLRGCQDVTINGENRAVGESIELERHAVISVGVVKFAL... 96
5 -7.970IDP06427 gene: B21R; B21R [Monkeypox virus Zaire-96-I-16] NP_536609 [Monkeypox virus Zaire-96-I-16]  ali follow..  372.........RKRRDLNGEFEFSTSESYGVNDDISHCFASPRRRFDHAKKDLGIDSVIPRGTTHFQVGASGASGGVVGDSFPFQNVKSRASLLAEK---------RVPITATEADLYATVNRQPKLPAGVKSTPFTEALASTINQKLSNVREVTYASSNLPGSSGYVHRPSDSVIYSSIRRSRLPSDSDSDYEDIQTVVKEYNERYGRSVSRTQSSSSESDFEDIDTVVREYRQKYGNAMAKGRSSSPKPDPLYSTVKKTTKSLSTGVDIVTKQSDYSLLPDVNTGSSIVSPLTRKGATRRRPRRPTNDGLQSPNPPLRNPLPQHDDYSPPQVHRPPTLPPKPVQNPTQLPPRPVGQLPPPIDQPDKGFSKFVSPRRCRRASSGVICGMIQSKPNDDTYSLLQRPKIEPEYAEVGNGIPKNNVPVIGNKHSKKYTSTMSKISTKFDKSTAFGAAMLLTGQQAISQQTRSTTLSRKDQMSKEEKIFEAVTMSLSTIGSTLSAGMTGGPKLMIAGMAITAGIIDTIKDIY 906
6 -7.500IDP95239 gene: wagN; WagN [Acinetobacter baumannii] AHB32491 [Acinetobacter baumannii]  ali follow..  10  1MSIELTIF-NRAHTLPRVYQSLKEQTLGSVDDTEKVVSEFINEQKLKIRYINVGKQAAWNRIFCCLDSDDA-----YSRYNVDDIFTKYSSFFERD--DVVGLRFLAYSNVKNTYDGDEVSKTIVVRT............................................................................................................................................................................................................................................................................................................................................................................................................... 146
7 -6.970IDP91728 gene: BIN1; myc box-dependent-interacting protein 1 isoform 1 [Homo sapiens] NP_647593 [Homo sapiens]  ali follow..  10  110......LWMDYHQKLVDQA-DTYLGQF------PDIKSRIAKSARHHYESLQTAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSR-FQSIAGLEENFHKESKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG........................................................................................................................................................ 520
8 -6.930IDP05055 gene: fliK; putative flagellar hook-length control protein [Clostridium difficile 630] CD0253 [Peptoclostridium difficile 630]  ali follow..  10  256..IESNVMDDSIKAIKHMKTNDIQEL---KLRPKELGDMLLKD---------GESMRA----VVTVFNKDVFDS------INKNIAD-LKQHLELTNVNI-KDVSVQMHSDNTNTSDTFDKAFEQQNRQNNQENMSKKNT................................................................................................................................................................................................................................................................................................................................................................................................... 374
9 -6.720IDP04279 putative AraC-family regulatory protein [Yersinia pestis CO92] YPO0260 [Yersinia pestis CO92]  ali follow..  15  108......LLEFFEKNRLNPWSSRYANELG--ISTRKLNFLFYEKFG-----------MSAKQWLLDQ------RLKKGCELLLST-RLRVADIAMECGFSNHAHFSDSFRRRFQQCPSHMRSL..................................................................................................................................................................................................................................................................................................................................................................................................................... 204
10 -6.620IDP04381 unnamed protein product [Shigella flexneri] CAC05791 [Shigella flexneri]  ali follow..  190..SFVSVSEKIARIVMANYSRNWASAVL--MSESSLKRRMYKEVGS-------------STFVHKIKLTEAIRKLRRTNTPISVISSEL-------GYSSPSYFSKVFFKYLKTYPQNIRKKNG................................................................................................................................................................................................................................................................................................................................................................................................................... 295

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.