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Query: gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPGLast
1 -10.700sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1  ali follow..  14  8...........................................................................................................................................QGSILKKVLEAL---------KDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSERCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDA---VVISCAKDGVKFSASGESNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPSSTVTLSMSAD-VPLVVE.................................... 238
2 -10.700sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2  ali follow..  12  3.......................................................................................................................................KCVMSGSQVK-VFGKAVQALSR-----ISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVDTTLHLKCKLGMKSILPIFRCLNSLERNIEKC-RIFTRSDKCKVVIQFFYRHGIKRTHNICFQESQPL-KNVCTNTLMIQPRLLADAIVLFTSSQEE---VTLAVTPLNFCLKSSNEESMDLSNAVHSEMFGMDTEITFCFKELKGILTFSEHAPISIYFDFPGKPLALS.................................... 258
3 -8.510sp|Q99638|RAD9A_HUMAN Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1  ali follow..  12  2.......................................................................................................................................KCLVTGGNVK-VLGKAVHSLSR-----IGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKC-CISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESL-PASCPHMLRAPARVLGEAVLPFSPALAE---VTLGIGRGRRVILRSYHEEEADSTAKAMVTEQEGVAITFCLKEFRGLLSFAENLNLSIHFDAPGRPAIFT.................................... 250
4 -6.280sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1  ali follow..  12  23...........................................................................................................................................NVRNLSTILKAIHFR---EHATCFATGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRM---CYQGYGYPLMLFLEEGGVVTVTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEV---LQITMSPDKPYFRLSTFDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVSCKVSIRTDNRGFLSLQYMIRNEDGQICFVE-------------YYCCP..... 273
5 -5.850sp|Q15155|NOMO1_HUMAN(removed signalp:1-31) Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5  ali   12  1...........................................................................TGRVL-------NGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITTGTYTIHAQKEHADIIATGFSVCGQISIIRFPDTVKQMNKYKVVLSSQDKDKSLVTVETDAYKVQVMVPEAETNRPMMDVAFVQFLASVSGKVSCLDTCGDLLVTLQSLSRQGEKRSLQLSGKVN-------AMTF-TFDNVLPGKYKISIMHEDWCWKNKSLEVEVLEDDMSAVEFRQTGYMLRCSLSHAITLEFYQDGNGRENVGIYNLS.................................................................... 289
6 -5.830sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1  ali   12  1...........................................................................TGRVL-------NGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITTGTYTIHAQKEHADIVATGFSVCGRISIIRFPDTVKQMNKYKVVLSSQDKDKSLVTVETDAYKVQVMVPEAETDRPVMDVAFVQFLASVSGKVSCLDTCGDLLVTLQSLSRQGEKRSLQLSGKVN-------AMTF-TFDNVLPGKYKISIMHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLRCSLSHAITLEFYQDGNGRENVGIYNLS.................................................................... 289
7 -5.650sp|Q86UX2|ITIH5_HUMAN(removed signalp:1-16) Inter-alpha-trypsin inhibitor heavy chain H5 OS=Homo sapiens GN=ITIH5 PE=2 SV=2  ali   12  1.......................................PFTSMKLRGPVPRMDGLEEAHGMSAAMGPEPVVQSVRGAGTQPGPLLKKPYQPRIKISKTSVDGDPHFVVDFPLSRFNIDGQPGDILRLVSDHRDSGVTVNG----ELIGAPAPPNGHKKQRTYLRTITILINKPERSYLEITPSRVILDVLPCNQSVVVGSWGLEVSVSANANVTVTIQGSIAFVILIHLYPAPFQRHHLGFYIANSEGLSSNCHGLLGQFLN----QDARLTEDPAGPSQNLTHPLLLQVGEGPEAVLTVKGHQVPVVWKQRKIYNGEEQIDC--------ARNNAAKLID............................................................ 300
8 -5.560sp|P69849|NOMO3_HUMAN(removed signalp:1-31) Nodal modulator 3 OS=Homo sapiens GN=NOMO3 PE=2 SV=2  ali   13  1...........................................................................TGRVL-------NGPEGDGVPEAVVTLNNQIKVKTKADGSFRLENITTGTY-TIKIAPNTPQLADIVATGFSVCGQISIIRFPDTVKQMNKYKVVLKDKSLVTVETDAYKVQVMVPEAETDRPVMDVAFVQFLASVSGKVSCLDTCGDLLVTLQSLSRQGEKRSLQLSGKVN-------AMTF-TFDNVLPGKYKISIMHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLRCSLSHAITLEFYQDGNGRENVGIYNLS.................................................................... 289
9 -5.420sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2  ali   11  27.............................................................................................PCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLNAVHVNVGAGSYLTVEENGYTPAIKQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDSPPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLF.................................................................. 293
10 -5.150sp|Q86WI1|PKHL1_HUMAN(removed signalp:1-20) Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2  ali   12  46.......................................PSISNITPSTGTVNELITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNE--PNIDLVLPNAGSTTGM-----------------TSVTIKGSGFAVSSAGVK-VLMGHFPCKVLSVN------YTAIECETSPAAQQLVDVDLLIHGVPAQCQGNCTFSYLESIT------------------PYITGVFPNSVIVKVLIEGEGLGTVLEDIAVFIGNQQFRAIEVNENNITALVTPLPVGHHSVSVVVGSKG.......................................................................... 300
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.